Variant report

Variant	rs9362358
Chromosome Location	chrX:138257468-138257469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11965027	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1325180	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1325181	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1325182	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1325183	0.81[ASN][1000 genomes]
rs1858572	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1858573	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2210325	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28885418	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6913452	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9359714	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv533984	chrX:137938683-138556308	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138242000-138259800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chrX:138252800-138276600	Weak transcription	Psoas Muscle	Psoas
3	chrX:138255000-138259000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:138257200-138263800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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