Variant report

Variant	rs9362437
Chromosome Location	chr6:88425085-88425086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88423961..88425619-chr6:88428046..88430277,2	MCF-7	breast:
2	chr6:88424254..88426709-chr6:88431488..88433115,2	MCF-7	breast:
3	chr6:88422761..88425445-chr6:88428349..88430740,2	K562	blood:
4	chr6:88409659..88413027-chr6:88424595..88428330,4	K562	blood:
5	chr6:88419645..88421479-chr6:88422577..88425566,3	MCF-7	breast:
6	chr6:88424923..88427514-chr6:88446888..88448552,2	K562	blood:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction
ENSG00000238628	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17455247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17564089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2307368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3757370	1.00[CEU][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88412800-88432600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:88420200-88436800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:88420400-88428400	Weak transcription	K562	blood
4	chr6:88422200-88432400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:88423200-88425200	Enhancers	Hela-S3	cervix
6	chr6:88423400-88425200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:88423400-88427000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:88423800-88425400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:88423800-88425800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:88424000-88425200	Enhancers	HSMM	muscle
11	chr6:88424000-88425600	Enhancers	NHEK	skin
12	chr6:88424000-88425800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:88424000-88425800	Enhancers	HMEC	breast
14	chr6:88424400-88427000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:88424400-88428200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:88424400-88428400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:88424400-88428600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:88424400-88432400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:88424600-88425200	Enhancers	A549	lung
20	chr6:88424600-88426800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:88424600-88427000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:88424600-88427000	Weak transcription	Primary B cells from cord blood	blood
23	chr6:88424600-88427000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:88424600-88427000	Weak transcription	HepG2	liver
25	chr6:88424600-88428200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:88424600-88428800	Weak transcription	NHLF	lung
27	chr6:88424600-88432400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:88424600-88432400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:88424600-88432400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:88424600-88432400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:88424600-88432800	Weak transcription	Fetal Thymus	thymus
32	chr6:88424600-88439200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:88424800-88426800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:88424800-88426800	Weak transcription	Osteobl	bone
35	chr6:88424800-88427000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:88424800-88428000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:88424800-88428600	Weak transcription	GM12878-XiMat	blood
38	chr6:88424800-88430400	Weak transcription	NHDF-Ad	bronchial
39	chr6:88425000-88426200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr6:88425000-88426800	Weak transcription	NH-A	brain
41	chr6:88425000-88428400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:88425000-88428600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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