Variant report

Variant	rs9364137
Chromosome Location	chr6:71891609-71891610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr6:71891308-71891632	H1-hESC	embryonic stem cell:	n/a	n/a
2	RCOR1	chr6:71890948-71891810	IMR90	lung:	n/a	n/a
3	TEAD4	chr6:71891124-71891620	ECC-1	luminal epithelium:	n/a	n/a
4	MAX	chr6:71891242-71891660	H1-hESC	embryonic stem cell:	n/a	n/a
5	CEBPB	chr6:71891202-71891646	H1-hESC	embryonic stem cell:	n/a	n/a
6	USF2	chr6:71891280-71891613	Hela-S3	cervix:	n/a	n/a
7	BACH1	chr6:71891178-71891641	H1-hESC	embryonic stem cell:	n/a	n/a
8	SP1	chr6:71891114-71891665	H1-hESC	embryonic stem cell:	n/a	n/a
9	CEBPB	chr6:71891162-71891620	Hela-S3	cervix:	n/a	n/a
10	TEAD4	chr6:71891159-71891673	H1-hESC	embryonic stem cell:	n/a	n/a
11	TEAD4	chr6:71891153-71891666	H1-hESC	embryonic stem cell:	n/a	n/a
12	FOSL2	chr6:71891163-71891687	SK-N-SH	brain:	n/a	n/a
13	MAZ	chr6:71890972-71891907	IMR90	lung:	n/a	n/a
14	TEAD4	chr6:71891120-71891685	ECC-1	luminal epithelium:	n/a	n/a
15	SP1	chr6:71891081-71891615	A549	lung:	n/a	n/a
16	GTF2F1	chr6:71891211-71891620	Hela-S3	cervix:	n/a	n/a
17	EP300	chr6:71891230-71891644	H1-hESC	embryonic stem cell:	n/a	n/a
18	MAFK	chr6:71890937-71891647	H1-hESC	embryonic stem cell:	n/a	n/a
19	SP1	chr6:71891148-71891666	H1-hESC	embryonic stem cell:	n/a	n/a
20	MAX	chr6:71891309-71891688	H1-hESC	embryonic stem cell:	n/a	n/a
21	SP1	chr6:71891160-71891640	A549	lung:	n/a	n/a
22	POLR2A	chr6:71891126-71891737	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
RNU6-411P	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10945294	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1857221	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1935795	0.81[ASN][1000 genomes]
rs2226162	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71887400-71892000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:71889200-71892200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:71889400-71892200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:71890200-71892000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:71890600-71891800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:71890600-71892000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:71890600-71892000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:71890600-71892200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:71890600-71892600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:71890800-71891800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:71890800-71891800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:71890800-71891800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:71890800-71891800	Enhancers	A549	lung
14	chr6:71890800-71891800	Enhancers	NHEK	skin
15	chr6:71890800-71891800	Enhancers	Osteobl	bone
16	chr6:71890800-71892000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr6:71890800-71892000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:71890800-71892000	Enhancers	Fetal Heart	heart
19	chr6:71890800-71892000	Enhancers	Hela-S3	cervix
20	chr6:71890800-71892000	Enhancers	HSMM	muscle
21	chr6:71890800-71892000	Enhancers	NHDF-Ad	bronchial
22	chr6:71890800-71892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:71890800-71892200	Enhancers	HMEC	breast
24	chr6:71891000-71891800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:71891000-71891800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:71891000-71891800	Enhancers	NH-A	brain
27	chr6:71891000-71891800	Enhancers	NHLF	lung
28	chr6:71891200-71891800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:71891200-71891800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:71891200-71891800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr6:71891200-71892200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr6:71891200-71892200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:71891600-71892000	Enhancers	HSMMtube	muscle

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