Variant report

Variant	rs9364863
Chromosome Location	chr6:167058740-167058741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1040446	0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs12055452	1.00[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs16899289	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2206124	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2223407	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3799568	0.80[AMR][1000 genomes]
rs4145432	1.00[ASW][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes]
rs4518470	0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs58803664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60078955	0.83[EUR][1000 genomes]
rs61157638	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62438673	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62438677	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6933990	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs6935306	0.83[EUR][1000 genomes]
rs6937198	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs9295359	1.00[CEU][hapmap]
rs9347140	1.00[CEU][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs9348157	1.00[ASW][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes]
rs9348159	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9355589	1.00[CEU][hapmap]
rs9356497	0.86[YRI][hapmap]
rs9356499	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9356500	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs9364861	0.89[LWK][hapmap];0.86[YRI][hapmap]
rs9366036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023649	chr6:167026469-167060732	Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9364863	PHF10	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167045000-167061200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:167047600-167061200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:167054400-167059400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:167054400-167061400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:167054600-167061400	Weak transcription	Fetal Heart	heart
6	chr6:167054600-167061400	Weak transcription	Gastric	stomach
7	chr6:167054600-167062800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:167054600-167063000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:167054600-167063000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:167054800-167061200	Weak transcription	Fetal Kidney	kidney
11	chr6:167054800-167062800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:167056600-167062800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:167057800-167069400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:167058200-167058800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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