Variant report

Variant	rs9365993
Chromosome Location	chr6:166698535-166698536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73043903	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73043970	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73043971	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7746728	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7760999	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348113	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364842	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9364843	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9459634	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9459635	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3390013	chr6:166697249-166701057	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166687600-166704800	Weak transcription	Right Atrium	heart
2	chr6:166691200-166706000	Weak transcription	Brain Anterior Caudate	brain
3	chr6:166697400-166699200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:166697800-166698800	Weak transcription	GM12878-XiMat	blood
5	chr6:166698000-166699000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:166698200-166699000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:166698400-166698800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:166698400-166699000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:166698400-166705800	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links