Variant report
| Variant | rs9366822 |
|---|---|
| Chromosome Location | chr6:33448264-33448265 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:33447179..33448941-chr6:33457441..33459924,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11757273 | 0.88[ASN][1000 genomes] |
| rs12204193 | 0.80[ASN][1000 genomes] |
| rs1613451 | 0.85[ASN][1000 genomes] |
| rs1755046 | 0.81[ASN][1000 genomes] |
| rs1755047 | 0.85[ASN][1000 genomes] |
| rs1755048 | 0.81[ASN][1000 genomes] |
| rs2247385 | 0.80[ASN][1000 genomes] |
| rs2274730 | 0.81[ASN][1000 genomes] |
| rs2480487 | 0.87[ASN][1000 genomes] |
| rs2772373 | 0.84[ASN][1000 genomes] |
| rs2772376 | 0.80[ASN][1000 genomes] |
| rs2772387 | 0.85[ASN][1000 genomes] |
| rs2772390 | 0.85[ASN][1000 genomes] |
| rs2772392 | 0.86[ASN][1000 genomes] |
| rs3130025 | 0.87[ASN][1000 genomes] |
| rs453590 | 0.80[ASN][1000 genomes] |
| rs4711325 | 0.85[ASN][1000 genomes] |
| rs66840884 | 0.87[ASN][1000 genomes] |
| rs9357159 | 0.87[ASN][1000 genomes] |
| rs9380355 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830637 | chr6:33329365-33510704 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
| 2 | nsv602832 | chr6:33382241-33520221 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9366822 | TAPBP | Cis_1M | lymphoblastoid | RTeQTL |
| rs9366822 | HLA-DPB2 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:33447200-33448800 | Weak transcription | K562 | blood |
