Variant report

Variant	rs9367192
Chromosome Location	chr6:44301342-44301343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10484624	1.00[CHB][hapmap]
rs11571889	1.00[CHB][hapmap]
rs11571939	1.00[CHB][hapmap]
rs11571999	1.00[CHB][hapmap]
rs11572021	1.00[CHB][hapmap]
rs16871769	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[EUR][1000 genomes]
rs16871891	1.00[CHB][hapmap]
rs16871894	1.00[CHB][hapmap]
rs7747512	1.00[CEU][hapmap]
rs9381311	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9381312	0.83[EUR][1000 genomes]
rs9395007	1.00[CEU][hapmap]
rs992160	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44296200-44303600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:44297400-44303400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:44300400-44302600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:44301000-44301400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr6:44301000-44301800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:44301200-44301800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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