Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1316576	0.87[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1353708	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1508638	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1605675	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1605676	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1848439	0.80[AMR][1000 genomes]
rs1934791	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1995768	0.85[CEU][hapmap];0.85[AMR][1000 genomes]
rs2202802	0.85[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2221666	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3777652	0.86[CEU][hapmap];0.85[AMR][1000 genomes]
rs3798278	0.85[AMR][1000 genomes]
rs6458994	0.85[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs682088	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7740868	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7740970	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7754752	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7760842	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7766669	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9367562	0.87[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9367561	TINAG	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54168800-54176400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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