Variant report

Variant	rs9368295
Chromosome Location	chr6:21313491-21313492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1535605	0.96[EUR][1000 genomes]
rs1535606	0.98[EUR][1000 genomes]
rs1535607	0.96[EUR][1000 genomes]
rs1969781	0.82[EUR][1000 genomes]
rs719098	0.98[EUR][1000 genomes]
rs9466035	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883473	chr6:21286834-21347410	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv462654	chr6:21296403-21322783	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv601091	chr6:21296403-21322783	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv883474	chr6:21312967-21337024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:21309200-21314600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:21311000-21313600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:21312000-21314200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:21312400-21314200	Enhancers	Fetal Brain Female	brain
5	chr6:21312600-21317600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:21313000-21313600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:21313000-21313600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:21313200-21314200	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links