Variant report

Variant	rs9368699
Chromosome Location	chr6:31802541-31802542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:478)
CpG islands
(count:61)
Chromatin interactive
region (count:45)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:478 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31801322-31807327	K562	blood:	n/a	n/a
2	MAFK	chr6:31802497-31803001	HepG2	liver:	n/a	n/a
3	STAT2	chr6:31802113-31803267	K562	blood:	n/a	chr6:31803169-31803180
4	PML	chr6:31801883-31803429	K562	blood:	n/a	n/a
5	SIN3AK20	chr6:31802173-31802910	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:31802029-31803003	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr6:31802107-31803345	U87	brain:	n/a	n/a
8	CTCF	chr6:31802223-31802881	K562	blood:	n/a	n/a
9	SMC3	chr6:31802271-31802962	GM12878	blood:	n/a	n/a
10	REST	chr6:31802033-31802935	HepG2	liver:	n/a	chr6:31802408-31802418
11	ELK1	chr6:31802185-31803256	K562	blood:	n/a	n/a
12	MAX	chr6:31802013-31803569	K562	blood:	n/a	chr6:31802670-31802680
13	HA-E2F1	chr6:31802027-31803226	MCF-7	breast:	n/a	chr6:31802651-31802661 chr6:31802346-31802357 chr6:31802431-31802441 chr6:31802432-31802442
14	RUNX3	chr6:31801950-31803267	GM12878	blood:	n/a	n/a
15	YY1	chr6:31802534-31802928	GM12891	blood:	n/a	chr6:31802678-31802688 chr6:31802653-31802662 chr6:31802677-31802689
16	POLR2A	chr6:31802087-31803428	GM12891	blood:	n/a	n/a
17	CREB1	chr6:31802122-31802943	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr6:31802154-31802914	H1-hESC	embryonic stem cell:	n/a	n/a
19	IRF1	chr6:31802083-31803318	K562	blood:	n/a	chr6:31803166-31803180 chr6:31802551-31802562 chr6:31802551-31802564 chr6:31803168-31803182 chr6:31803162-31803182
20	NFIC	chr6:31802072-31802975	GM12878	blood:	n/a	n/a
21	NFATC1	chr6:31802176-31803366	GM12878	blood:	n/a	n/a
22	POLR2A	chr6:31802062-31803228	MCF-7	breast:	n/a	n/a
23	TAF1	chr6:31802019-31803420	K562	blood:	n/a	n/a
24	NRF1	chr6:31802073-31803013	SK-N-SH	brain:	n/a	chr6:31802334-31802345
25	TAF1	chr6:31801940-31803212	ECC-1	luminal epithelium:	n/a	n/a
26	POLR2A	chr6:31802060-31803387	GM12892	blood:	n/a	n/a
27	SIN3AK20	chr6:31802052-31803345	MCF-7	breast:	n/a	n/a
28	CEBPD	chr6:31801962-31803418	K562	blood:	n/a	n/a
29	REST	chr6:31801887-31803703	H1-neurons	neurons:	n/a	chr6:31802408-31802418
30	CTCF	chr6:31802420-31802570	SAEC	small airway:	n/a	n/a
31	YY1	chr6:31802080-31803182	K562	blood:	n/a	chr6:31802678-31802688 chr6:31802414-31802428 chr6:31802653-31802662 chr6:31802677-31802689 chr6:31802428-31802442
32	FOXM1	chr6:31802064-31802980	GM12878	blood:	n/a	n/a
33	POLR2A	chr6:31802064-31803345	U87	brain:	n/a	n/a
34	CEBPB	chr6:31802005-31803493	GM12878	blood:	n/a	chr6:31802997-31803008
35	YY1	chr6:31802470-31802932	H1-hESC	embryonic stem cell:	n/a	chr6:31802678-31802688 chr6:31802653-31802662 chr6:31802677-31802689
36	MAZ	chr6:31802105-31803254	K562	blood:	n/a	chr6:31802670-31802680
37	TAF1	chr6:31802137-31802948	SK-N-SH	brain:	n/a	n/a
38	POLR2A	chr6:31801988-31803528	GM12891	blood:	n/a	n/a
39	EP300	chr6:31802147-31802820	HepG2	liver:	n/a	chr6:31802431-31802440 chr6:31802685-31802699 chr6:31802653-31802662
40	STAT3	chr6:31802176-31802770	MCF10A-Er-Src	breast:	n/a	chr6:31802385-31802396
41	POLR2A	chr6:31802175-31803328	IMR90	lung:	n/a	n/a
42	POLR2A	chr6:31802068-31803476	Raji	blood:	n/a	n/a
43	POLR2A	chr6:31802104-31803262	GM18951	blood:	n/a	n/a
44	YY1	chr6:31802202-31803281	GM12878	blood:	n/a	chr6:31802678-31802688 chr6:31802414-31802428 chr6:31802653-31802662 chr6:31802677-31802689 chr6:31802428-31802442
45	ELF1	chr6:31802202-31803163	GM12878	blood:	n/a	n/a
46	TAF7	chr6:31801965-31803025	K562	blood:	n/a	n/a
47	ZMIZ1	chr6:31802049-31803226	K562	blood:	n/a	n/a
48	RCOR1	chr6:31802071-31803294	K562	blood:	n/a	n/a
49	POLR2A	chr6:31802028-31803624	MCF-7	breast:	n/a	n/a
50	TAF1	chr6:31802473-31803019	GM12891	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31802507-31802557	HCF	heart:	n/a
2	chr6:31802507-31802557	GM19239	blood:	n/a
3	chr6:31802507-31802557	AG04449	skin:	fetal
4	chr6:31802507-31802557	A549	lung:	n/a
5	chr6:31802507-31802557	RPTEC	kidney:	n/a
6	chr6:31802507-31802557	Jurkat	blood:	n/a
7	chr6:31802507-31802557	SK-N-MC	brain:	n/a
8	chr6:31802507-31802557	HUVEC	blood vessel:	n/a
9	chr6:31802507-31802557	HRCEpiC	kidney:	n/a
10	chr6:31802507-31802557	GM12878	blood:	n/a
11	chr6:31802507-31802557	NH-A	brain:	n/a
12	chr6:31802507-31802557	HEK293	kidney:	embryo
13	chr6:31802507-31802557	ProgFib	skin:	n/a
14	chr6:31802507-31802557	AoSMC	blood vessel:	n/a
15	chr6:31802507-31802557	PrEC	prostate:	n/a
16	chr6:31802507-31802557	SK-N-SH_RA	brain:	n/a
17	chr6:31802507-31802557	HL-60	blood:	n/a
18	chr6:31802507-31802557	AG09309	skin:	n/a
19	chr6:31802507-31802557	AG09319	gingival:	n/a
20	chr6:31802507-31802557	Hela-S3	cervix:	n/a
21	chr6:31802507-31802557	BJ	skin:	n/a
22	chr6:31802507-31802557	IMR90	lung:	fetal
23	chr6:31802507-31802557	HIPEpiC	eye:	n/a
24	chr6:31802507-31802557	HAEpiC	amniotic membrane:	n/a
25	chr6:31802507-31802557	GM12891	blood:	n/a
26	chr6:31802507-31802557	HRPEpiC	eye:	n/a
27	chr6:31802507-31802557	GM12892	blood:	n/a
28	chr6:31802507-31802557	HEEpiC	esophagus:	n/a
29	chr6:31802507-31802557	MCF-7	breast:	n/a
30	chr6:31802507-31802557	HCPEpiC	choroid plexus:	n/a
31	chr6:31802507-31802557	SAEC	small airway:	n/a
32	chr6:31802507-31802557	HRE	kidney:	n/a
33	chr6:31802507-31802557	PFSK-1	brain:	n/a
34	chr6:31802507-31802557	HPAEpiC	pulmonary alveolar:	n/a
35	chr6:31802507-31802557	HCM	heart:	n/a
36	chr6:31802507-31802557	K562	blood:	n/a
37	chr6:31802507-31802557	NB4	blood:	n/a
38	chr6:31802507-31802557	H1-hESC	embryonic stem cell:	embryo
39	chr6:31802507-31802557	Hepatocyte	liver:	n/a
40	chr6:31802507-31802557	Caco-2	colon:	n/a
41	chr6:31802507-31802557	PANC-1	pancreas:	n/a
42	chr6:31802507-31802557	T-47D	breast:	n/a
43	chr6:31802507-31802557	CMK	blood:	n/a
44	chr6:31802507-31802557	AG10803	skin:	n/a
45	chr6:31802507-31802557	ECC-1	luminal epithelium:	n/a
46	chr6:31802507-31802557	ovcar-3	ovarian:	n/a
47	chr6:31802507-31802557	BE2_C	brain:	n/a
48	chr6:31802507-31802557	HepG2	liver:	n/a
49	chr6:31802507-31802557	GM06990	blood:	n/a
50	chr6:31802507-31802557	NT2-D1	testis:	n/a

(count:45 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31760851..31764032-chr6:31800769..31804370,7	MCF-7	breast:
2	chr3:47324146..47324903-chr6:31802269..31802778,2	HCT-116	colon:
3	chr6:31513047..31514729-chr6:31802148..31804053,2	MCF-7	breast:
4	chr6:31800755..31815108-chr6:31823340..31833266,54	K562	blood:
5	chr12:29301993..29302516-chr6:31802207..31802861,2	NB4	blood:
6	chr6:31800806..31810142-chr6:31827604..31833040,24	MCF-7	breast:
7	chr6:31702549..31706090-chr6:31802474..31805993,4	MCF-7	breast:
8	chr12:49658435..49659273-chr6:31802298..31803102,2	Hela-S3	cervix:
9	chr6:31737226..31750413-chr6:31786206..31805473,50	MCF-7	breast:
10	chr6:31801616..31806746-chr6:31865132..31870777,8	MCF-7	breast:
11	chr11:64877278..64879972-chr6:31801371..31804052,2	MCF-7	breast:
12	chr6:31801272..31804221-chr6:31918478..31920926,2	K562	blood:
13	chr6:31656454..31658818-chr6:31801447..31804411,2	MCF-7	breast:
14	chr6:31798354..31804916-chr6:31860790..31871982,18	MCF-7	breast:
15	chr19:811579..813681-chr6:31802411..31804366,2	K562	blood:
16	chr6:31801734..31803566-chr6:31863143..31864724,2	MCF-7	breast:
17	chr6:31802366..31805115-chr6:31938170..31940148,2	K562	blood:
18	chr6:31696408..31700150-chr6:31800226..31805691,5	MCF-7	breast:
19	chr6:31800973..31803192-chr6:31924804..31927036,2	MCF-7	breast:
20	chr6:31630921..31635353-chr6:31802314..31807064,6	MCF-7	breast:
21	chr6:31735011..31745595-chr6:31798203..31806127,22	MCF-7	breast:
22	chr6:31647774..31650438-chr6:31800193..31802973,5	MCF-7	breast:
23	chr6:31799457..31804164-chr6:31924693..31928301,4	K562	blood:
24	chr6:27113220..27115290-chr6:31800925..31803637,2	K562	blood:
25	chr6:31801090..31813654-chr6:31824519..31834411,41	MCF-7	breast:
26	chr6:31800867..31807275-chr6:31862460..31868132,16	K562	blood:
27	chr6:31801119..31803237-chr6:31933557..31935113,2	K562	blood:
28	chr6:31800669..31805219-chr6:31862460..31868046,11	K562	blood:
29	chr6:31669236..31670926-chr6:31800796..31802801,2	MCF-7	breast:
30	chr6:31802171..31804335-chr6:31837175..31839959,2	MCF-7	breast:
31	chr6:31745758..31747408-chr6:31800818..31802986,2	MCF-7	breast:
32	chr6:31588069..31590107-chr6:31801555..31804354,2	MCF-7	breast:
33	chr6:31801458..31804077-chr6:31939275..31941249,3	MCF-7	breast:
34	chr6:31513842..31516738-chr6:31801353..31804200,3	K562	blood:
35	chr6:31801233..31804005-chrX:109560726..109563107,2	K562	blood:
36	chr6:31801352..31804698-chr6:31868339..31871951,3	K562	blood:
37	chr6:31697061..31698060-chr6:31802013..31803127,3	K562	blood:
38	chr6:31801119..31803237-chr6:31932731..31935113,3	K562	blood:
39	chr6:31802188..31802757-chr8:134309407..134310125,2	HCT-116	colon:
40	chr6:31747450..31751295-chr6:31800640..31804723,4	MCF-7	breast:
41	chr6:31800194..31804653-chr6:31841439..31846611,7	MCF-7	breast:
42	chr6:31758502..31767561-chr6:31786193..31804196,52	MCF-7	breast:
43	chr6:31800580..31812447-chr6:31823435..31837480,47	K562	blood:
44	chr6:31697326..31699677-chr6:31802341..31805046,2	MCF-7	breast:
45	chr6:31619085..31621370-chr6:31801083..31803892,2	MCF-7	breast:

No data

Variant related genes	Relation type
SNORD52	TF binding region
SNORD48	TF binding region
C6orf48	TF binding region
C6orf48	CpG island
SNORD48	CpG island
SNORD52	CpG island
ENSG00000149823	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000243649	Chromatin interaction
ENSG00000204351	Chromatin interaction
ENSG00000114648	Chromatin interaction
ENSG00000204428	Chromatin interaction
ENSG00000204366	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000221267	Chromatin interaction
ENSG00000064763	Chromatin interaction
ENSG00000201555	Chromatin interaction
ENSG00000213760	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000204498	Chromatin interaction
ENSG00000213722	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000258101	Chromatin interaction
ENSG00000204469	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000204356	Chromatin interaction
ENSG00000254870	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000167553	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000104419	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000204427	Chromatin interaction
ENSG00000101935	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000263414	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000088727	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204386	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2227956	0.89[ASN][1000 genomes]
rs2280801	1.00[AMR][1000 genomes]
rs2295663	1.00[AMR][1000 genomes]
rs28381344	1.00[AFR][1000 genomes]
rs28732150	1.00[AMR][1000 genomes]
rs28732154	1.00[AMR][1000 genomes]
rs28732158	1.00[AMR][1000 genomes]
rs28732162	0.89[EUR][1000 genomes]
rs28732164	0.84[EUR][1000 genomes]
rs28732165	0.84[EUR][1000 genomes]
rs9267577	0.81[ASN][1000 genomes]
rs9348877	0.96[ASN][1000 genomes]
rs9378164	0.87[AMR][1000 genomes]
rs9380266	0.87[AMR][1000 genomes]
rs9391731	1.00[AMR][1000 genomes]
rs9404941	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
2	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
5	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
7	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
9	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
10	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
12	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
13	nsv884429	chr6:31730356-31837066	Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
14	nsv462872	chr6:31778272-31864304	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
15	nsv601945	chr6:31778272-31864304	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
16	nsv884457	chr6:31785228-31803130	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
17	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
18	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
19	nsv884461	chr6:31785453-31827045	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
20	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
21	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
22	nsv462874	chr6:31794592-31864304	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
23	nsv601959	chr6:31794592-31864304	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
24	nsv884463	chr6:31797422-31827045	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
HIV-1 control	20041166	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9368699	C6orf48	cis	lymphoblastoid	seeQTL
rs9368699	MICB	cis	uninvolved skin	skin_eQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31799000-31802600	Weak transcription	Gastric	stomach
2	chr6:31799600-31803800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr6:31799800-31802600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:31801400-31805000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:31801600-31803000	Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr6:31801600-31803600	Active TSS	Primary T cells from cord blood	blood
7	chr6:31801600-31803600	Active TSS	Fetal Brain Female	brain
8	chr6:31801600-31803800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:31801600-31805000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:31801800-31802800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr6:31801800-31803600	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr6:31801800-31803800	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr6:31801800-31803800	Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr6:31801800-31803800	Active TSS	Brain Cingulate Gyrus	brain
15	chr6:31801800-31803800	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:31801800-31803800	Active TSS	Psoas Muscle	Psoas
17	chr6:31801800-31803800	Active TSS	Rectal Smooth Muscle	rectum
18	chr6:31801800-31803800	Active TSS	Thymus	Thymus
19	chr6:31801800-31804000	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr6:31801800-31805000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:31802000-31802600	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:31802000-31802600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr6:31802000-31802600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:31802000-31802800	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr6:31802000-31802800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:31802000-31802800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:31802000-31803200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:31802000-31803200	Active TSS	Brain Hippocampus Middle	brain
29	chr6:31802000-31803400	Active TSS	H1 Cell Line	embryonic stem cell
30	chr6:31802000-31803400	Active TSS	Colon Smooth Muscle	Colon
31	chr6:31802000-31803600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:31802000-31803600	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr6:31802000-31803600	Active TSS	Brain Germinal Matrix	brain
34	chr6:31802000-31803600	Active TSS	Colonic Mucosa	Colon
35	chr6:31802000-31803800	Active TSS	H9 Cell Line	embryonic stem cell
36	chr6:31802000-31803800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:31802000-31803800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:31802000-31803800	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr6:31802000-31803800	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr6:31802000-31803800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:31802000-31803800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr6:31802000-31803800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:31802000-31803800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:31802000-31803800	Active TSS	Liver	Liver
45	chr6:31802000-31803800	Active TSS	Brain Substantia Nigra	brain
46	chr6:31802000-31803800	Active TSS	Fetal Intestine Small	intestine
47	chr6:31802000-31803800	Active TSS	Left Ventricle	heart
48	chr6:31802000-31803800	Active TSS	Pancreas	Pancrea
49	chr6:31802000-31803800	Active TSS	Placenta Amnion	Placenta Amnion
50	chr6:31802000-31803800	Active TSS	Right Ventricle	heart

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