Variant report

Variant	rs9368728
Chromosome Location	chr6:11471043-11471044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1923525	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs480684	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs486127	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs487729	0.81[ASN][1000 genomes]
rs490327	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs505839	0.81[ASN][1000 genomes]
rs518183	0.80[ASN][1000 genomes]
rs528012	0.81[ASN][1000 genomes]
rs528087	0.81[ASN][1000 genomes]
rs533319	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs562508	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs568867	0.81[ASN][1000 genomes]
rs570714	0.81[ASN][1000 genomes]
rs588948	0.81[ASN][1000 genomes]
rs601505	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs609135	0.81[ASN][1000 genomes]
rs617157	0.81[ASN][1000 genomes]
rs618573	0.83[ASN][1000 genomes]
rs618998	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs620867	0.81[ASN][1000 genomes]
rs623024	0.81[ASN][1000 genomes]
rs671048	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9394123	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9368728	TMEM170B	cis	Adipose Subcutaneous	GTEx
rs9368728	TMEM170B	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11465800-11473200	Weak transcription	HepG2	liver
2	chr6:11469200-11473000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:11470200-11479200	Weak transcription	Fetal Kidney	kidney
4	chr6:11470400-11473200	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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