Variant report

Variant	rs9369012
Chromosome Location	chr6:37584079-37584080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12665558	0.86[ASN][1000 genomes]
rs12665609	0.86[ASN][1000 genomes]
rs13191142	0.96[ASN][1000 genomes]
rs13199706	0.87[ASN][1000 genomes]
rs13217481	0.87[ASN][1000 genomes]
rs13217642	0.86[ASN][1000 genomes]
rs17742617	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883898	0.86[ASN][1000 genomes]
rs34207353	0.87[ASN][1000 genomes]
rs34278717	0.87[ASN][1000 genomes]
rs34952823	0.87[ASN][1000 genomes]
rs35238957	0.87[ASN][1000 genomes]
rs61608890	0.80[AFR][1000 genomes]
rs804821	0.82[ASN][1000 genomes]
rs810855	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366939	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366940	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369013	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369014	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv602955	chr6:37581200-37599962	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37581200-37584400	Enhancers	K562	blood
2	chr6:37582600-37584400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:37583000-37584200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37583000-37584400	Enhancers	Osteobl	bone
5	chr6:37583200-37584400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:37583200-37584400	Enhancers	NHDF-Ad	bronchial
7	chr6:37583200-37584600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:37583200-37584800	Enhancers	NH-A	brain
9	chr6:37583200-37587200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:37583400-37584200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:37583400-37584200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:37583400-37584400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:37583600-37584600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:37583600-37587000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:37583800-37584600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:37583800-37584600	Enhancers	Hela-S3	cervix
17	chr6:37583800-37586600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:37584000-37584400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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