Variant report

Variant	rs9369098
Chromosome Location	chr6:38950385-38950386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38949259..38950815-chr6:38952793..38955307,2	MCF-7	breast:
2	chr6:38944155..38947204-chr6:38949230..38952066,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10755703	0.91[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs12208827	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13214237	1.00[CEU][hapmap]
rs13214471	1.00[CEU][hapmap]
rs1332011	0.88[CEU][hapmap]
rs1412264	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1412270	1.00[CEU][hapmap]
rs1537232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891333	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs16891370	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2076514	0.87[CEU][hapmap]
rs2273094	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34826703	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35548896	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35928736	0.92[EUR][1000 genomes]
rs4573077	0.94[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56353223	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6924462	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7754034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357293	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366989	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9369095	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369096	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9369097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394556	0.89[CEU][hapmap]
rs9394568	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38945200-38958400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:38945400-38958000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:38946200-38952400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:38949800-38950600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:38950000-38950400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr6:38950000-38950800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:38950000-38950800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:38950000-38950800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:38950200-38950600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:38950200-38950600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:38950200-38950800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:38950200-38950800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:38950200-38951000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:38950200-38951000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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