Variant report

Variant	rs9369434
Chromosome Location	chr6:43918407-43918408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:43735432..43742006-chr6:43916130..43924754,17	K562	blood:
2	chr6:43734091..43739914-chr6:43917004..43923314,11	MCF-7	breast:
3	chr6:43738015..43740761-chr6:43916683..43921119,5	MCF-7	breast:
4	chr6:43736933..43737638-chr6:43918040..43918811,2	MCF-7	breast:
5	chr6:43680878..43682620-chr6:43917140..43919611,2	K562	blood:
6	chr6:43692485..43693434-chr6:43918130..43919228,3	K562	blood:
7	chr6:43917227..43922653-chr6:44039743..44042402,5	K562	blood:
8	chr6:43754968..43757763-chr6:43917516..43919358,2	K562	blood:
9	chr6:43735367..43746902-chr6:43913394..43925044,24	K562	blood:

No data

Variant related genes	Relation type
ENSG00000231881	Chromatin interaction
ENSG00000272114	Chromatin interaction
ENSG00000237686	Chromatin interaction
ENSG00000112715	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9472159	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv428480	chr6:43764313-43929172	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43905600-43919000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:43905800-43918600	Weak transcription	Stomach Mucosa	stomach
3	chr6:43909200-43922200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:43916400-43918800	Bivalent Enhancer	HepG2	liver
5	chr6:43916600-43918600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:43916600-43920000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:43916600-43920200	Enhancers	Fetal Lung	lung
8	chr6:43916600-43921600	Enhancers	K562	blood
9	chr6:43916800-43918800	Weak transcription	Right Atrium	heart
10	chr6:43917000-43918800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:43917000-43918800	Weak transcription	Right Ventricle	heart
12	chr6:43917000-43921800	Weak transcription	Left Ventricle	heart
13	chr6:43917000-43921800	Weak transcription	Psoas Muscle	Psoas
14	chr6:43917200-43918600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:43917200-43918800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:43917600-43919400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:43918000-43919000	Enhancers	Fetal Muscle Trunk	muscle
18	chr6:43918000-43919000	Weak transcription	Fetal Stomach	stomach
19	chr6:43918200-43918600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:43918200-43918600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:43918200-43918600	Weak transcription	HSMM	muscle
22	chr6:43918200-43919800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:43918400-43919800	Enhancers	Liver	Liver
24	chr6:43918400-43920000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links