Variant report

Variant	rs937171
Chromosome Location	chr15:50194749-50194750
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr15:50194536-50194913	A549	lung:	n/a	n/a
2	FOSL2	chr15:50194383-50195402	A549	lung:	n/a	chr15:50195110-50195121 chr15:50195109-50195116 chr15:50195109-50195117
3	FOS	chr15:50194448-50194817	MCF10A-Er-Src	breast:	n/a	n/a
4	CTCF	chr15:50194640-50194790	RPTEC	kidney:	n/a	n/a
5	CTCF	chr15:50194660-50194810	HBMEC	blood vessel:	n/a	n/a
6	USF1	chr15:50194587-50194919	SK-N-SH	brain:	n/a	n/a
7	MAX	chr15:50194543-50194863	Hela-S3	cervix:	n/a	chr15:50194728-50194738
8	CTCF	chr15:50194640-50194790	HA-sp	spinal cord:	n/a	n/a
9	CTCF	chr15:50194600-50194750	AG09309	skin:	n/a	n/a
10	CTCF	chr15:50194406-50194937	IMR90	lung:	n/a	n/a
11	CTCF	chr15:50194720-50194870	MCF-7	breast:	n/a	n/a
12	CTCF	chr15:50194620-50194770	GM06990	blood:	n/a	n/a
13	CTCF	chr15:50194620-50194770	HCM	heart:	n/a	n/a
14	CTCF	chr15:50194600-50194750	HA-sp	spinal cord:	n/a	n/a
15	CTCF	chr15:50194597-50194910	HCT-116	colon:	n/a	n/a
16	CTCF	chr15:50194640-50194790	AG04450	lung:	n/a	n/a
17	RAD21	chr15:50194405-50194997	MCF-7	breast:	n/a	n/a
18	CTCF	chr15:50194620-50194770	AG09319	gingival:	n/a	n/a
19	CTCF	chr15:50194640-50194790	HFF	foreskin:	n/a	n/a
20	CTCF	chr15:50194511-50194813	K562	blood:	n/a	n/a
21	CTCF	chr15:50194600-50194750	AG04450	lung:	n/a	n/a
22	CTCF	chr15:50194600-50194750	HCPEpiC	choroid plexus:	n/a	n/a
23	RAD21	chr15:50194512-50194866	SK-N-SH_RA	brain:	n/a	n/a
24	RAD21	chr15:50194532-50194838	SK-N-SH_RA	brain:	n/a	n/a
25	CTCF	chr15:50194600-50194750	BJ	skin:	n/a	n/a
26	FOS	chr15:50194466-50195132	MCF10A-Er-Src	breast:	n/a	chr15:50195110-50195121 chr15:50195109-50195116 chr15:50195109-50195117
27	CTCF	chr15:50194600-50194750	AoAF	blood vessel:	n/a	n/a
28	CTCF	chr15:50194634-50194802	Gliobla	brain:	n/a	n/a
29	CTCF	chr15:50194623-50194772	HUVEC	blood vessel:	n/a	n/a
30	CTCF	chr15:50194617-50194750	K562	blood:	n/a	n/a
31	CTCF	chr15:50194640-50194790	HMF	breast:	n/a	n/a
32	RAD21	chr15:50194352-50194988	A549	lung:	n/a	n/a
33	CTCF	chr15:50194620-50194770	HRPEpiC	eye:	n/a	n/a
34	CTCF	chr15:50194620-50194770	AG04449	skin:	n/a	n/a
35	CTCF	chr15:50194660-50194810	HMF	breast:	n/a	n/a
36	CTCF	chr15:50194673-50194750	MCF-7	breast:	n/a	n/a
37	CTCF	chr15:50194609-50194800	LNCaP	prostate:	n/a	n/a
38	USF1	chr15:50194564-50194838	SK-N-SH_RA	brain:	n/a	n/a
39	CTCF	chr15:50194640-50194790	HRPEpiC	eye:	n/a	n/a
40	CTCF	chr15:50194640-50194790	GM06990	blood:	n/a	n/a
41	CTCF	chr15:50194640-50194790	HMEC	breast:	n/a	n/a
42	CTCF	chr15:50194640-50194790	HEEpiC	esophagus:	n/a	n/a
43	USF1	chr15:50194598-50194844	SK-N-SH_RA	brain:	n/a	n/a
44	CTCF	chr15:50194620-50194770	HRE	kidney:	n/a	n/a
45	USF1	chr15:50194615-50194916	A549	lung:	n/a	n/a
46	MYC	chr15:50194604-50194876	MCF10A-Er-Src	breast:	n/a	chr15:50194728-50194738
47	STAT3	chr15:50194318-50195128	Hela-S3	cervix:	n/a	chr15:50194736-50194750
48	CTCF	chr15:50194620-50194770	HPAF	blood vessel:	n/a	n/a
49	CTCF	chr15:50194652-50194784	MCF-7	breast:	n/a	n/a
50	CTCF	chr15:50194600-50194750	HVMF	connective:	n/a	n/a

Variant related genes	Relation type
ATP8B4	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6493384	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50145600-50200400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:50149400-50198000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:50161800-50210600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:50163000-50200400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:50167600-50200800	Weak transcription	Spleen	Spleen
6	chr15:50171200-50195200	Weak transcription	Placenta	Placenta
7	chr15:50180600-50199400	Strong transcription	Primary hematopoietic stem cells	blood
8	chr15:50182000-50199200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:50187600-50195200	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:50190200-50194800	Enhancers	Brain Hippocampus Middle	brain
11	chr15:50190200-50196800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:50190400-50200600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:50191200-50196600	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:50191200-50197000	Enhancers	Colon Smooth Muscle	Colon
15	chr15:50191200-50197000	Enhancers	Fetal Stomach	stomach
16	chr15:50191400-50196600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:50191400-50196800	Enhancers	Rectal Smooth Muscle	rectum
18	chr15:50191800-50196200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:50192000-50195000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:50192000-50195200	Enhancers	Brain Substantia Nigra	brain
21	chr15:50192200-50195800	Enhancers	Hela-S3	cervix
22	chr15:50192800-50197600	Enhancers	Fetal Kidney	kidney
23	chr15:50193000-50195400	Weak transcription	Brain Germinal Matrix	brain
24	chr15:50193000-50196600	Enhancers	Brain Angular Gyrus	brain
25	chr15:50193200-50194800	Enhancers	NHLF	lung
26	chr15:50193200-50196400	Enhancers	Brain Anterior Caudate	brain
27	chr15:50193200-50196600	Enhancers	Stomach Smooth Muscle	stomach
28	chr15:50193800-50196200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr15:50193800-50196400	Enhancers	Fetal Lung	lung
30	chr15:50193800-50200000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:50194000-50194800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr15:50194000-50195600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:50194000-50195800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:50194000-50195800	Flanking Active TSS	NHDF-Ad	bronchial
35	chr15:50194000-50196400	Enhancers	HSMM	muscle
36	chr15:50194200-50195000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr15:50194200-50195400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr15:50194200-50195800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:50194400-50194800	Enhancers	Osteobl	bone
40	chr15:50194400-50195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:50194400-50195200	Flanking Active TSS	A549	lung
42	chr15:50194400-50195600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:50194400-50199000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:50194600-50194800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:50194600-50195400	Weak transcription	Adipose Nuclei	Adipose
46	chr15:50194600-50195400	Weak transcription	Ovary	ovary
47	chr15:50194600-50195600	Weak transcription	Right Atrium	heart
48	chr15:50194600-50195800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links