Variant report

Variant	rs937237
Chromosome Location	chr15:77747869-77747870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr15:77747499-77748721	HUVEC	blood vessel:	n/a	chr15:77748294-77748304
2	POU2F2	chr15:77747854-77748303	GM12891	blood:	n/a	chr15:77748050-77748062 chr15:77748051-77748061 chr15:77748052-77748061 chr15:77748051-77748061

No.	Distal block	Cell Line	Cell type
1	chr15:77745907..77748429-chr15:77784323..77786088,2	K562	blood:
2	chr15:77745907..77748744-chr15:77783742..77785823,2	K562	blood:
3	chr15:77478565..77479090-chr15:77747847..77748742,2	K562	blood:
4	chr15:77741931..77744582-chr15:77746845..77748481,2	K562	blood:
5	chr15:77745716..77748701-chr15:77749105..77750869,2	MCF-7	breast:

Variant related genes	Relation type
HMG20A	TF binding region
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12593582	0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173432	0.81[YRI][hapmap]
rs7180023	0.88[AFR][1000 genomes]
rs8027364	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs955091	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77714000-77748600	Weak transcription	Placenta	Placenta
2	chr15:77717000-77754400	Weak transcription	K562	blood
3	chr15:77729600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:77729600-77749200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr15:77730400-77748600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:77730600-77758800	Weak transcription	Lung	lung
7	chr15:77733200-77748000	Weak transcription	HMEC	breast
8	chr15:77733200-77749200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:77733200-77750200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:77736400-77748800	Weak transcription	Pancreas	Pancrea
11	chr15:77736800-77749400	Weak transcription	Gastric	stomach
12	chr15:77736800-77750800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:77737200-77749400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:77737800-77748000	Weak transcription	Left Ventricle	heart
15	chr15:77737800-77749200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:77738200-77749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:77738400-77748000	Weak transcription	Psoas Muscle	Psoas
18	chr15:77738400-77749200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr15:77738400-77749400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:77738600-77750600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:77739000-77750800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr15:77739600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:77739600-77748000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:77739800-77749600	Weak transcription	Brain Anterior Caudate	brain
25	chr15:77739800-77749800	Weak transcription	HepG2	liver
26	chr15:77739800-77750800	Weak transcription	Liver	Liver
27	chr15:77739800-77751800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:77739800-77755600	Weak transcription	A549	lung
29	chr15:77740000-77748000	Weak transcription	Brain Substantia Nigra	brain
30	chr15:77740000-77750600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:77740200-77751800	Weak transcription	Brain Angular Gyrus	brain
32	chr15:77740800-77748000	Weak transcription	Right Atrium	heart
33	chr15:77740800-77748000	Weak transcription	Dnd41	blood
34	chr15:77741000-77756000	Weak transcription	Colonic Mucosa	Colon
35	chr15:77741200-77748000	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:77741400-77748000	Weak transcription	Small Intestine	intestine
37	chr15:77741400-77748600	Weak transcription	Fetal Intestine Small	intestine
38	chr15:77741600-77748000	Weak transcription	Fetal Stomach	stomach
39	chr15:77741600-77749200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:77741800-77748000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:77741800-77749600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:77742400-77749400	Weak transcription	Fetal Thymus	thymus
43	chr15:77742400-77750800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:77742600-77749200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:77743200-77749600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:77743200-77750800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:77743200-77751400	Weak transcription	Hela-S3	cervix
48	chr15:77743200-77763200	Weak transcription	Brain Germinal Matrix	brain
49	chr15:77743400-77748600	Weak transcription	Fetal Intestine Large	intestine
50	chr15:77743400-77749200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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