Variant report

Variant	rs9373249
Chromosome Location	chr6:140097111-140097112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:140018170..140021108-chr6:140096378..140098271,2	MCF-7	breast:
2	chr6:140096649..140099517-chr6:140260643..140262599,2	K562	blood:
3	chr6:140081802..140083701-chr6:140096060..140098267,2	K562	blood:
4	chr6:140091742..140094049-chr6:140096525..140099279,2	K562	blood:
5	chr6:140093234..140095381-chr6:140096123..140098454,2	MCF-7	breast:
6	chr6:140096683..140098380-chr6:140468859..140470369,2	K562	blood:
7	chr6:139694049..139695787-chr6:140096448..140099243,2	K562	blood:
8	chr6:139695846..139697718-chr6:140097081..140099970,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10499212	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9403120	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140086000-140099400	Weak transcription	Ovary	ovary
2	chr6:140086000-140101000	Weak transcription	Left Ventricle	heart
3	chr6:140087400-140099200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:140087800-140098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:140088200-140100000	Weak transcription	NHDF-Ad	bronchial
6	chr6:140093000-140097200	Weak transcription	Fetal Kidney	kidney
7	chr6:140096200-140098000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:140096200-140100800	Enhancers	K562	blood
9	chr6:140096400-140098000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:140096400-140099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:140096400-140100200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:140096400-140100200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:140096400-140100400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:140096400-140100400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:140096400-140100800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:140096600-140097200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:140096600-140100400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:140096800-140097800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:140096800-140098000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:140096800-140099000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:140096800-140099000	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:140096800-140099600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:140097000-140097400	Enhancers	HepG2	liver
24	chr6:140097000-140097600	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:140097000-140098600	Enhancers	Fetal Lung	lung
26	chr6:140097000-140099600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr6:140097000-140099600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr6:140097000-140100000	Enhancers	Fetal Heart	heart
29	chr6:140097000-140100200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:140097000-140100600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:140097000-140101000	Enhancers	Rectal Smooth Muscle	rectum

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