Variant report

Variant	rs9373498
Chromosome Location	chr6:146876819-146876820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146870262..146872676-chr6:146874501..146877147,2	K562	blood:
2	chr6:146869556..146872424-chr6:146874913..146877464,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11155475	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12189826	0.94[EUR][1000 genomes]
rs3804286	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804288	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3804289	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6570768	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6915731	0.95[CEU][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap]
rs6918907	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6939108	0.95[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs7773384	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9377003	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9377004	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9390393	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9399580	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146865800-146877400	Weak transcription	Placenta	Placenta
2	chr6:146865800-146878200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:146866400-146881800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:146866600-146877800	Weak transcription	Gastric	stomach
5	chr6:146866600-146877800	Weak transcription	Lung	lung
6	chr6:146866600-146883800	Weak transcription	Small Intestine	intestine
7	chr6:146866600-146885800	Weak transcription	Pancreas	Pancrea
8	chr6:146866800-146877600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:146866800-146878000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:146867000-146877200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:146867000-146877800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:146867000-146880600	Weak transcription	Right Ventricle	heart
13	chr6:146867200-146877800	Weak transcription	Primary T cells from cord blood	blood
14	chr6:146867400-146877400	Weak transcription	Fetal Intestine Small	intestine
15	chr6:146869600-146877000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:146870000-146877000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:146870000-146877000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:146870200-146877000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:146870600-146877000	Strong transcription	HSMM	muscle
20	chr6:146870800-146877000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:146871000-146877200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:146871800-146877800	Weak transcription	Fetal Stomach	stomach
23	chr6:146872400-146877200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:146872400-146878200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:146872600-146877000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:146872800-146878000	Weak transcription	A549	lung
27	chr6:146872800-146878200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:146873000-146877600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:146873800-146877000	Strong transcription	NHEK	skin
30	chr6:146873800-146878200	Weak transcription	Stomach Mucosa	stomach
31	chr6:146874400-146877200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:146874800-146877000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:146875200-146877000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:146875200-146877000	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr6:146875200-146877000	Strong transcription	NHDF-Ad	bronchial
36	chr6:146875200-146877000	Strong transcription	Osteobl	bone
37	chr6:146875400-146877000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:146875400-146877000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr6:146876000-146878200	Weak transcription	Hela-S3	cervix
40	chr6:146876400-146878000	Weak transcription	Aorta	Aorta
41	chr6:146876400-146878000	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:146876400-146878000	Weak transcription	Ovary	ovary
43	chr6:146876400-146878000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:146876400-146878000	Weak transcription	Thymus	Thymus
45	chr6:146876400-146878000	Weak transcription	Spleen	Spleen
46	chr6:146876400-146878200	Weak transcription	Left Ventricle	heart
47	chr6:146876400-146878400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:146876400-146883600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:146876400-146891400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:146876600-146878200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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