Variant report

Variant	rs9374788
Chromosome Location	chr6:119686385-119686386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1295391	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1295392	0.98[ASN][1000 genomes]
rs195048	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs195056	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs195058	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs195090	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs195092	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2057554	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2299886	0.80[EUR][1000 genomes]
rs3778111	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6937640	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7755155	0.81[EUR][1000 genomes]
rs7755572	0.80[EUR][1000 genomes]
rs9489638	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119671800-119689200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:119673400-119690000	Weak transcription	K562	blood
3	chr6:119673600-119687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:119675200-119688800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:119677000-119691800	Weak transcription	Adipose Nuclei	Adipose
6	chr6:119679400-119691600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:119681000-119690200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:119682000-119693200	Weak transcription	Left Ventricle	heart
9	chr6:119684600-119688000	Weak transcription	Fetal Heart	heart
10	chr6:119685400-119688200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:119686000-119686400	Strong transcription	Primary B cells from cord blood	blood
12	chr6:119686000-119686600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr6:119686200-119686600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr6:119686200-119686800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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