Variant report
| Variant | rs937526 |
|---|---|
| Chromosome Location | chr12:119141405-119141406 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:119137290..119138837-chr12:119141047..119142658,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10774985 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10774986 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10774988 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10851022 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11069057 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12296422 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12303035 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12311037 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1846598 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1915348 | 0.84[ASN][1000 genomes] |
| rs1965349 | 0.84[ASN][1000 genomes] |
| rs2030411 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6490197 | 0.84[ASN][1000 genomes] |
| rs745872 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7968705 | 0.84[ASN][1000 genomes] |
| rs7979725 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv930978 | chr12:118866332-119450600 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039515 | chr12:119085196-119218918 | ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1045363 | chr12:119091734-119219659 | Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv519756 | chr12:119092357-119227242 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:119140800-119151800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
