Variant report

Variant	rs9375565
Chromosome Location	chr6:128742606-128742607
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11754295	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1292626	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128698800-128743200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:128703200-128743000	Weak transcription	Pancreas	Pancrea
3	chr6:128715600-128743000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:128728600-128742800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:128728800-128748000	Weak transcription	Ovary	ovary
6	chr6:128731000-128753400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:128732400-128752400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:128732800-128742800	Weak transcription	Brain Angular Gyrus	brain
9	chr6:128734200-128748400	Weak transcription	Gastric	stomach
10	chr6:128734800-128742800	Weak transcription	Fetal Lung	lung
11	chr6:128735600-128743400	Weak transcription	NHEK	skin
12	chr6:128737200-128742800	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:128739600-128742800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:128739600-128742800	Weak transcription	Fetal Heart	heart
15	chr6:128739600-128744600	Weak transcription	Right Atrium	heart
16	chr6:128739600-128748400	Weak transcription	Psoas Muscle	Psoas
17	chr6:128739600-128748400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:128739600-128755600	Weak transcription	Osteobl	bone
19	chr6:128739800-128743000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:128739800-128743600	Weak transcription	Liver	Liver
21	chr6:128739800-128745800	Weak transcription	Aorta	Aorta
22	chr6:128739800-128748400	Weak transcription	Left Ventricle	heart
23	chr6:128739800-128762600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:128740000-128752800	Weak transcription	NH-A	brain
25	chr6:128740000-128756000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:128740200-128742800	Weak transcription	HSMM	muscle
27	chr6:128740400-128742800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:128740800-128743400	Weak transcription	Fetal Intestine Large	intestine
29	chr6:128740800-128777000	Weak transcription	Fetal Intestine Small	intestine
30	chr6:128741800-128743000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr6:128741800-128743600	Enhancers	Brain Substantia Nigra	brain
32	chr6:128741800-128753400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:128742000-128748200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:128742200-128744400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:128742400-128744400	Enhancers	HepG2	liver
36	chr6:128742600-128743800	Enhancers	Brain Anterior Caudate	brain
37	chr6:128742600-128743800	Enhancers	Brain Cingulate Gyrus	brain
38	chr6:128742600-128744000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:128742600-128744800	Enhancers	HSMMtube	muscle

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