Variant report

Variant	rs9375802
Chromosome Location	chr6:131438677-131438678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10484764	1.00[EUR][1000 genomes]
rs12525492	1.00[EUR][1000 genomes]
rs12526166	1.00[EUR][1000 genomes]
rs12660246	1.00[EUR][1000 genomes]
rs12662825	1.00[EUR][1000 genomes]
rs12664060	1.00[EUR][1000 genomes]
rs17060099	1.00[EUR][1000 genomes]
rs17060119	1.00[EUR][1000 genomes]
rs17060127	1.00[EUR][1000 genomes]
rs2224637	1.00[EUR][1000 genomes]
rs28841032	1.00[EUR][1000 genomes]
rs3756773	1.00[EUR][1000 genomes]
rs3777469	1.00[EUR][1000 genomes]
rs3777470	1.00[EUR][1000 genomes]
rs3777471	1.00[EUR][1000 genomes]
rs3777473	1.00[EUR][1000 genomes]
rs3777479	1.00[EUR][1000 genomes]
rs3777484	1.00[EUR][1000 genomes]
rs3777495	1.00[EUR][1000 genomes]
rs3777496	1.00[EUR][1000 genomes]
rs3777497	1.00[EUR][1000 genomes]
rs3777498	1.00[EUR][1000 genomes]
rs3777499	1.00[EUR][1000 genomes]
rs3822867	1.00[EUR][1000 genomes]
rs9375793	1.00[EUR][1000 genomes]
rs9492888	1.00[EUR][1000 genomes]
rs9492889	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1019112	chr6:131409284-131452300	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761029	chr6:131413789-131452312	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016925	chr6:131418532-131452300	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131437200-131439000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:131438000-131443000	Weak transcription	NHLF	lung

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