Variant report

Variant	rs937582
Chromosome Location	chr5:52462761-52462762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10513015	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1374055	0.80[ASN][1000 genomes]
rs1374059	0.88[ASN][1000 genomes]
rs1500363	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1500364	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1500365	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1500366	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1500367	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1500368	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1500369	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs153681	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs153684	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16881049	0.83[ASN][1000 genomes]
rs16881068	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1814735	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1846702	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1846703	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs254474	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs254520	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs254521	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs254625	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs254632	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs254633	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2547520	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2547522	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2561392	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2591905	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2591906	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2591907	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2591908	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2650677	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2650680	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2650681	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2650682	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2650683	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2937663	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs30724	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6450114	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6450118	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6450119	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6879405	0.83[ASN][1000 genomes]
rs6883958	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6892025	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6895567	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs726904	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs726905	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73094952	0.93[EUR][1000 genomes]
rs73100427	0.83[ASN][1000 genomes]
rs7703368	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7714660	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7723126	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs937579	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs937580	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9918234	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52458200-52463600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:52458200-52463600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:52458200-52463600	Weak transcription	Osteobl	bone
4	chr5:52460000-52465200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:52460200-52462800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:52460200-52464400	Enhancers	NHDF-Ad	bronchial
7	chr5:52460400-52462800	Enhancers	Fetal Stomach	stomach
8	chr5:52460400-52464200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:52460400-52465200	Enhancers	Adipose Nuclei	Adipose
10	chr5:52460800-52463400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:52460800-52463800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:52461400-52464600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:52461800-52463000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:52461800-52465000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:52462000-52464200	Enhancers	NHLF	lung
16	chr5:52462200-52462800	Enhancers	Fetal Muscle Leg	muscle
17	chr5:52462200-52463600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:52462200-52464400	Enhancers	Liver	Liver
19	chr5:52462400-52464800	Enhancers	Colon Smooth Muscle	Colon
20	chr5:52462600-52463400	Weak transcription	Right Atrium	heart
21	chr5:52462600-52463600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:52462600-52463600	Weak transcription	Fetal Lung	lung

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