Variant report

Variant	rs9376730
Chromosome Location	chr6:143542244-143542245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143538181..143539746-chr6:143541338..143543676,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2876551	0.83[EUR][1000 genomes]
rs55739456	0.85[AMR][1000 genomes]
rs55918821	0.81[AMR][1000 genomes]
rs56162220	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62429647	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9376731	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9390073	0.82[AMR][1000 genomes]
rs9399430	0.82[EUR][1000 genomes]
rs9403466	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275228	chr6:143539833-143549921	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:143514400-143545200	Weak transcription	HMEC	breast
3	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143525600-143544200	Weak transcription	HepG2	liver
5	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:143535000-143544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:143535000-143544200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:143535000-143545200	Weak transcription	Pancreas	Pancrea
11	chr6:143535000-143549600	Weak transcription	Lung	lung
12	chr6:143535000-143551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
14	chr6:143536000-143543000	Weak transcription	Ovary	ovary
15	chr6:143536000-143543000	Weak transcription	Right Atrium	heart
16	chr6:143536200-143546000	Weak transcription	Right Ventricle	heart
17	chr6:143536600-143542800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:143537000-143543000	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:143537600-143542800	Weak transcription	Fetal Lung	lung
20	chr6:143537800-143542400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:143537800-143547200	Strong transcription	K562	blood
22	chr6:143538000-143542400	Weak transcription	Fetal Stomach	stomach
23	chr6:143538000-143542400	Weak transcription	Psoas Muscle	Psoas
24	chr6:143538000-143542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:143539000-143543200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:143539800-143542800	Enhancers	Fetal Heart	heart
27	chr6:143540200-143542800	Weak transcription	Adipose Nuclei	Adipose
28	chr6:143540800-143545200	Weak transcription	NHEK	skin
29	chr6:143541000-143545400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:143541200-143550800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:143541400-143543200	Weak transcription	Fetal Intestine Small	intestine
32	chr6:143541400-143545200	Weak transcription	Left Ventricle	heart
33	chr6:143541600-143542400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:143541600-143542400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:143541600-143542600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:143541600-143542600	Enhancers	H9 Cell Line	embryonic stem cell
37	chr6:143541600-143543400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr6:143541600-143546400	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr6:143541800-143542600	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr6:143541800-143542800	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr6:143541800-143544200	Weak transcription	Liver	Liver
42	chr6:143541800-143545800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:143542000-143542600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:143542000-143544600	Enhancers	Colon Smooth Muscle	Colon
45	chr6:143542000-143545400	Enhancers	Rectal Smooth Muscle	rectum
46	chr6:143542000-143545600	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr6:143542200-143544600	Weak transcription	Fetal Intestine Large	intestine

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