Variant report

Variant	rs9376779
Chromosome Location	chr6:144010901-144010902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143996710..144001910-chr6:144005817..144014875,10	MCF-7	breast:
2	chr6:143997575..144000803-chr6:144010017..144014247,5	MCF-7	breast:
3	chr6:144009959..144011502-chr6:144013449..144016270,2	K562	blood:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10872562	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1108314	0.81[ASN][1000 genomes]
rs11155315	0.88[ASN][1000 genomes]
rs11155317	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12195195	0.86[ASN][1000 genomes]
rs12198291	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12201496	0.86[ASN][1000 genomes]
rs12206069	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12207002	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12208927	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12528456	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3924969	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3934959	0.89[ASN][1000 genomes]
rs6901659	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6907410	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6915784	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7741424	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7748882	0.89[ASN][1000 genomes]
rs7766510	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7769294	0.89[ASN][1000 genomes]
rs7772565	0.90[ASN][1000 genomes]
rs7776119	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180640	0.81[ASN][1000 genomes]
rs9373396	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373397	0.86[ASN][1000 genomes]
rs9376776	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9386043	0.86[ASN][1000 genomes]
rs9390126	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9399458	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403521	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403523	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886737	chr6:144010570-144033992	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144001800-144012200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:144002000-144013000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:144002800-144011200	Weak transcription	Hela-S3	cervix
4	chr6:144003600-144015000	Weak transcription	Esophagus	oesophagus
5	chr6:144003600-144015000	Weak transcription	Gastric	stomach
6	chr6:144004400-144013000	Weak transcription	Fetal Kidney	kidney
7	chr6:144005000-144020400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:144005600-144016000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:144005800-144015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:144006000-144011000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:144006000-144013200	Weak transcription	Small Intestine	intestine
12	chr6:144006000-144017800	Weak transcription	Fetal Heart	heart
13	chr6:144007800-144011800	Enhancers	Left Ventricle	heart
14	chr6:144007800-144013200	Enhancers	HepG2	liver
15	chr6:144007800-144013600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:144008000-144011200	Enhancers	HSMMtube	muscle
17	chr6:144008000-144014000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:144008200-144012000	Weak transcription	Liver	Liver
19	chr6:144008400-144012800	Weak transcription	Fetal Intestine Large	intestine
20	chr6:144008600-144011600	Enhancers	Psoas Muscle	Psoas
21	chr6:144008600-144015000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:144008800-144011400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:144008800-144011600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:144008800-144015000	Weak transcription	NHEK	skin
25	chr6:144009000-144011200	Weak transcription	Fetal Lung	lung
26	chr6:144009000-144011200	Weak transcription	HSMM	muscle
27	chr6:144009000-144011400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:144009000-144011600	Enhancers	Right Ventricle	heart
29	chr6:144009000-144013400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:144009000-144015200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:144009200-144011200	Weak transcription	NH-A	brain
32	chr6:144009200-144011600	Enhancers	Aorta	Aorta
33	chr6:144009200-144015000	Weak transcription	HMEC	breast
34	chr6:144009200-144016200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:144009400-144011200	Weak transcription	Adipose Nuclei	Adipose
36	chr6:144009400-144011600	Enhancers	Lung	lung
37	chr6:144009400-144011600	Enhancers	Stomach Smooth Muscle	stomach
38	chr6:144009400-144011600	Weak transcription	HUVEC	blood vessel
39	chr6:144009400-144012800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:144009400-144015600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:144009400-144016600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:144009600-144011000	Weak transcription	Osteobl	bone
43	chr6:144009600-144011200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:144009600-144011200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:144009600-144011400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:144009600-144013000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr6:144009600-144015000	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:144009800-144011200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:144010000-144011600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:144010000-144011800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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