Variant report

Variant	rs9376907
Chromosome Location	chr6:100798572-100798573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1876155	0.86[ASN][1000 genomes]
rs9386109	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403695	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100796200-100800200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:100796400-100801400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:100796600-100801600	Weak transcription	HMEC	breast
4	chr6:100796800-100798800	Weak transcription	NH-A	brain
5	chr6:100796800-100801000	Weak transcription	HSMMtube	muscle
6	chr6:100796800-100801200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:100796800-100801200	Weak transcription	HSMM	muscle
8	chr6:100796800-100801400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:100796800-100801400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:100796800-100801400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:100797000-100801400	Weak transcription	Osteobl	bone
12	chr6:100797800-100799000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:100797800-100799800	Enhancers	HUVEC	blood vessel
14	chr6:100798000-100799000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:100798000-100802400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:100798400-100799000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:100798400-100799400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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