Variant report

Variant	rs9378437
Chromosome Location	chr6:5664604-5664605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11243029	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5641400-5665200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:5641400-5665400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:5641400-5673800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:5641600-5665400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:5641600-5671400	Weak transcription	Lung	lung
6	chr6:5642200-5672400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:5645400-5666200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:5650000-5671400	Weak transcription	Small Intestine	intestine
9	chr6:5651200-5671400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:5653200-5677600	Weak transcription	Gastric	stomach
11	chr6:5654600-5671400	Weak transcription	Left Ventricle	heart
12	chr6:5654600-5677600	Weak transcription	Pancreas	Pancrea
13	chr6:5656000-5672200	Weak transcription	Aorta	Aorta
14	chr6:5656800-5669800	Weak transcription	NHEK	skin
15	chr6:5656800-5670000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:5657200-5665000	Weak transcription	Primary B cells from cord blood	blood
17	chr6:5658000-5671400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:5660400-5672600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:5661200-5672200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:5661400-5665400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:5661400-5666000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:5661600-5671400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:5662600-5666200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:5663200-5673400	Weak transcription	Fetal Brain Male	brain
25	chr6:5663400-5664800	Enhancers	Brain Hippocampus Middle	brain
26	chr6:5663400-5666200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:5663400-5672400	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:5663600-5665600	Enhancers	Primary T cells from cord blood	blood
29	chr6:5663600-5667200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:5663600-5668200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr6:5663800-5665400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr6:5663800-5665800	Enhancers	Fetal Thymus	thymus
33	chr6:5664000-5664800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:5664000-5665000	Enhancers	Brain Angular Gyrus	brain
35	chr6:5664000-5665600	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr6:5664000-5668000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr6:5664000-5668200	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:5664000-5670200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr6:5664200-5666200	Enhancers	GM12878-XiMat	blood
40	chr6:5664200-5666800	Enhancers	Primary B cells from peripheral blood	blood
41	chr6:5664200-5670800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:5664400-5665400	Weak transcription	Fetal Stomach	stomach
43	chr6:5664400-5665800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:5664400-5666800	Enhancers	Thymus	Thymus
45	chr6:5664400-5668600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:5664600-5665200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:5664600-5665400	Weak transcription	Spleen	Spleen
48	chr6:5664600-5668800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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