Variant report

Variant	rs9379856
Chromosome Location	chr6:26366836-26366837
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:26366757-26367081	NB4	blood:	n/a	n/a
2	MXI1	chr6:26364117-26367241	SK-N-SH	brain:	n/a	chr6:26365782-26365791
3	RFX5	chr6:26362983-26367827	IMR90	lung:	n/a	chr6:26365394-26365403 chr6:26365363-26365372 chr6:26365370-26365378 chr6:26365360-26365375
4	POLR2A	chr6:26366653-26367112	GM12892	blood:	n/a	n/a
5	RFX5	chr6:26362934-26367943	SK-N-SH	brain:	n/a	chr6:26365394-26365403 chr6:26365363-26365372 chr6:26365370-26365378 chr6:26365360-26365375
6	YY1	chr6:26366809-26367154	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:26365788..26367808-chr6:26370738..26372498,2	K562	blood:

Variant related genes	Relation type
BTN3A2	TF binding region
ENSG00000215979	TF binding region
ENSG00000186470	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 33 )

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs12173854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12174602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12174623	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12174631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12174639	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12176317	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13191660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13195509	0.92[CEU][hapmap]
rs13216828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13218591	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs13220261	0.90[CEU][hapmap]
rs16891725	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16901784	0.85[CEU][hapmap]
rs1977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1979	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1985732	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs2072803	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2072806	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2073527	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2073528	1.00[JPT][hapmap]
rs2073529	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2073530	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2073531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2076030	1.00[CEU][hapmap];0.88[LWK][hapmap];0.82[MKK][hapmap];0.88[EUR][1000 genomes]
rs2093169	0.85[CEU][hapmap]
rs2235251	0.87[EUR][1000 genomes]
rs2393667	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs28362606	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28551159	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3047288	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34273322	0.87[EUR][1000 genomes]
rs34436535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34550936	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34622023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34878490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35304979	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35307327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35934643	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35942482	0.87[EUR][1000 genomes]
rs3734542	0.91[CEU][hapmap]
rs3734544	0.85[CEU][hapmap]
rs3757138	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757150	0.85[CEU][hapmap]
rs3799380	0.85[CEU][hapmap]
rs3799383	0.85[CEU][hapmap]
rs3823158	0.92[CEU][hapmap]
rs4518487	0.84[CEU][hapmap]
rs4712980	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs4712981	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs58825580	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456728	0.85[CEU][hapmap]
rs66823108	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66827971	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67509210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68072215	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68112369	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900665	0.88[EUR][1000 genomes]
rs6920256	0.85[CEU][hapmap]
rs6933583	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs71544290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71557332	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71557334	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71557335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836482	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72841536	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7773938	0.85[CEU][hapmap]
rs9348709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348721	0.88[EUR][1000 genomes]
rs9357006	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358932	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358933	1.00[JPT][hapmap]
rs9358934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358938	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9358939	0.87[EUR][1000 genomes]
rs9358944	0.85[CEU][hapmap]
rs9358945	0.85[CEU][hapmap]
rs9358946	0.85[CEU][hapmap]
rs9366653	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366654	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9366655	0.92[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9366656	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9366658	0.85[CEU][hapmap]
rs9379850	0.92[ASN][1000 genomes]
rs9379851	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379852	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379853	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379855	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379858	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379859	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9379863	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9379864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9379870	1.00[JPT][hapmap]
rs9379871	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9379873	0.90[EUR][1000 genomes]
rs9379875	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9393703	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393704	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393708	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393710	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393711	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393712	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393713	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393714	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393715	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393718	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9467772	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482729	chr6:26291011-26470898	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:33)

SNP	Gene	Cis/trans	Tissue	Source
rs9379856	CMAH	cis	parietal	SCAN
rs9379856	BTN3A2	cis	Heart Left Ventricle	GTEx
rs9379856	BTN3A2	cis	Artery Tibial	GTEx
rs9379856	BTN3A2	cis	uninvolved skin	skin_eQTL
rs9379856	BTN3A3	cis	lymphoblastoid	seeQTL
rs9379856	BTN3A2	cis	lesional skin	skin_eQTL
rs9379856	BTN3A2	cis	parietal	SCAN
rs9379856	BTN3A2	cis	Stomach	GTEx
rs9379856	BTN3A2	Cis_1M	lymphoblastoid	RTeQTL
rs9379856	BTN3A2	cis	Thyroid	GTEx
rs9379856	BTN3A2	cis	Whole Blood	GTEx
rs9379856	LRRC16A	cis	parietal	SCAN
rs9379856	BTN3A2	cis	lymphoblastoid	GTEx
rs9379856	BTN3A2	cis	Esophagus Muscularis	GTEx
rs9379856	BTN3A2	cis	Adipose Subcutaneous	GTEx
rs9379856	BTN3A2///BTN3A3	Cis_1M	lymphoblastoid	RTeQTL
rs9379856	BTN3A2	cis	cerebellum	SCAN
rs9379856	BTN3A2	cis	normal skin	skin_eQTL
rs9379856	ZSCAN23	cis	parietal	SCAN
rs9379856	BTN3A2	cis	Esophagus Mucosa	GTEx
rs9379856	ZKSCAN3	cis	parietal	SCAN
rs9379856	BTN3A2	cis	Muscle Skeletal	GTEx
rs9379856	BTN3A2	cis	Artery Aorta	GTEx
rs9379856	BTN3A1	Cis_1M	lymphoblastoid	RTeQTL
rs9379856	HIST1H2BD	cis	cerebellum	SCAN
rs9379856	BTN3A2	cis	Nerve Tibial	GTEx
rs9379856	BTN3A2	cis	lymphoblastoid	seeQTL
rs9379856	ZSCAN23	cis	cerebellum	SCAN
rs9379856	BTN3A2	cis	lung	GTEx
rs9379856	ZNF192	cis	cerebellum	SCAN
rs9379856	BTN3A2	cis	Skin Sun Exposed Lower leg	GTEx
rs9379856	HIST1H4L	cis	parietal	SCAN
rs9379856	BTN3A2	cis	multi-tissue	Pritchard

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26364800-26367600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:26365000-26367000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:26365000-26367200	Active TSS	Primary T killer memory cells from peripheral blood	blood
4	chr6:26365000-26367200	Active TSS	Rectal Smooth Muscle	rectum
5	chr6:26365000-26367800	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr6:26365600-26367600	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr6:26365600-26367800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:26365800-26367600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr6:26365800-26367600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:26365800-26375200	Weak transcription	Aorta	Aorta
11	chr6:26366000-26367000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:26366000-26367000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:26366000-26367000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr6:26366000-26367000	Enhancers	Fetal Kidney	kidney
15	chr6:26366000-26367200	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:26366000-26367200	Weak transcription	Small Intestine	intestine
17	chr6:26366000-26367800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:26366000-26368800	Weak transcription	Fetal Stomach	stomach
19	chr6:26366000-26369400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:26366000-26369400	Weak transcription	Fetal Lung	lung
21	chr6:26366000-26369400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:26366000-26369400	Weak transcription	Lung	lung
23	chr6:26366000-26369400	Weak transcription	Ovary	ovary
24	chr6:26366000-26369800	Weak transcription	Brain Angular Gyrus	brain
25	chr6:26366000-26369800	Weak transcription	Brain Substantia Nigra	brain
26	chr6:26366000-26373200	Weak transcription	Colonic Mucosa	Colon
27	chr6:26366000-26373800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:26366000-26374800	Weak transcription	Esophagus	oesophagus
29	chr6:26366000-26375000	Weak transcription	Brain Anterior Caudate	brain
30	chr6:26366000-26375600	Weak transcription	Gastric	stomach
31	chr6:26366000-26382600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:26366000-26383000	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:26366000-26383200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:26366000-26383200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:26366000-26383200	Weak transcription	Pancreas	Pancrea
36	chr6:26366000-26383200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:26366000-26383200	Weak transcription	HSMMtube	muscle
38	chr6:26366000-26383400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr6:26366200-26367000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr6:26366200-26367000	Enhancers	NHEK	skin
41	chr6:26366200-26367400	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr6:26366200-26367600	Flanking Active TSS	Dnd41	blood
43	chr6:26366200-26367800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:26366200-26367800	Enhancers	HepG2	liver
45	chr6:26366200-26367800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr6:26366200-26369400	Weak transcription	Placenta	Placenta
47	chr6:26366200-26371200	Weak transcription	A549	lung
48	chr6:26366200-26374600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:26366200-26374800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:26366200-26375000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links