Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:26201684..26204523-chr6:26580707..26582898,2	K562	blood:
2	chr6:26161523..26164154-chr6:26581877..26584576,2	K562	blood:
3	chr6:26580716..26583805-chr6:26585836..26589281,4	K562	blood:
4	chr6:26575952..26578920-chr6:26582301..26585861,4	K562	blood:
5	chr6:26575145..26580691-chr6:26582301..26587887,10	K562	blood:
6	chr6:26581396..26586059-chr6:26589997..26593151,4	K562	blood:

Variant related genes	Relation type
ENSG00000217275	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1535275	0.92[EUR][1000 genomes]
rs15580	0.87[MKK][hapmap]
rs2451715	0.84[JPT][hapmap]
rs2451716	0.84[JPT][hapmap]
rs2451746	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2451752	0.84[JPT][hapmap]
rs2451753	0.84[JPT][hapmap]
rs2494691	0.84[JPT][hapmap]
rs2494705	0.84[JPT][hapmap]
rs2494708	0.80[ASN][1000 genomes]
rs2494711	0.84[JPT][hapmap]
rs3736780	0.87[MKK][hapmap]
rs3800302	0.84[JPT][hapmap]
rs4591839	0.84[JPT][hapmap]
rs4711112	1.00[CEU][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs4713007	0.87[MKK][hapmap]
rs6456729	0.82[EUR][1000 genomes]
rs6456738	0.91[ASN][1000 genomes]
rs6906521	1.00[CEU][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs6911330	0.87[MKK][hapmap]
rs6911540	0.84[JPT][hapmap]
rs6913550	0.91[EUR][1000 genomes]
rs6915555	0.84[JPT][hapmap]
rs6916321	1.00[CEU][hapmap]
rs6919391	0.84[JPT][hapmap]
rs6929908	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6931849	0.84[JPT][hapmap]
rs7745632	0.87[MKK][hapmap]
rs7750131	0.84[EUR][1000 genomes]
rs7765920	1.00[CEU][hapmap];0.93[GIH][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes]
rs9295696	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9357008	0.89[CEU][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs9379902	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs9379892	BTN3A3	cis	cerebellum	SCAN
rs9379892	HIST1H3H	cis	parietal	SCAN
rs9379892	DCDC2	cis	cerebellum	SCAN
rs9379892	RP11-457M11.5	cis	Esophagus Mucosa	GTEx
rs9379892	BTN2A1	cis	parietal	SCAN
rs9379892	RP11-457M11.2	cis	Artery Aorta	GTEx
rs9379892	BTN3A2	cis	cerebellum	SCAN
rs9379892	BTN3A2	cis	parietal	SCAN
rs9379892	ABT1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26581400-26584600	Enhancers	K562	blood

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