Variant report

Variant	rs9379963
Chromosome Location	chr6:27146092-27146093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27144640..27146653-chr6:27152847..27154919,2	K562	blood:
2	chr6:27145577..27147398-chr6:27220465..27222539,2	MCF-7	breast:
3	chr6:27144021..27146883-chr6:27258754..27261461,2	MCF-7	breast:
4	chr6:27144211..27146855-chr6:27719701..27721733,2	K562	blood:
5	chr6:26193549..26195260-chr6:27144695..27146377,2	MCF-7	breast:
6	chr6:27144940..27148492-chr6:27773557..27776885,4	MCF-7	breast:
7	chr6:27143412..27146140-chr6:27152536..27156532,5	K562	blood:
8	chr6:27142864..27146588-chr6:27859215..27861126,3	K562	blood:
9	chr6:27127283..27131812-chr6:27144311..27148515,7	MCF-7	breast:
10	chr6:27116861..27118975-chr6:27145251..27147249,2	MCF-7	breast:
11	chr6:27145619..27146177-chr6:27759593..27760501,2	MCF-7	breast:
12	chr6:27144310..27147077-chr6:27519122..27521076,2	K562	blood:
13	chr6:27143921..27146331-chr6:27500978..27503317,2	K562	blood:
14	chr1:144533738..144534615-chr6:27145680..27146387,2	Hela-S3	cervix:
15	chr6:27145758..27149060-chr6:27154386..27156904,3	MCF-7	breast:
16	chr6:27145074..27147467-chr6:27777007..27779595,2	K562	blood:
17	chr6:27145253..27149186-chr6:27150759..27152469,4	K562	blood:
18	chr6:27144382..27146185-chr6:27797360..27798889,2	MCF-7	breast:
19	chr6:27124335..27127582-chr6:27143975..27147070,5	MCF-7	breast:
20	chr6:27144364..27147244-chr6:27219253..27220807,2	K562	blood:
21	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000217862	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000112812	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000201699	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12055730	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2393918	0.90[EUR][1000 genomes]
rs4582379	0.90[EUR][1000 genomes]
rs57375968	1.00[EUR][1000 genomes]
rs6456769	0.90[EUR][1000 genomes]
rs6927247	0.90[EUR][1000 genomes]
rs760647	0.90[EUR][1000 genomes]
rs9348754	0.95[EUR][1000 genomes]
rs9348755	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9366682	1.00[EUR][1000 genomes]
rs9366683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368488	0.89[EUR][1000 genomes]
rs9393788	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393792	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9467996	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27143800-27146200	Active TSS	Placenta	Placenta
2	chr6:27143800-27146800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:27143800-27146800	Active TSS	Fetal Lung	lung
4	chr6:27143800-27146800	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr6:27143800-27147000	Active TSS	HSMM	muscle
6	chr6:27143800-27147400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:27143800-27147400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:27143800-27147600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr6:27143800-27147600	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:27144000-27146200	Active TSS	GM12878-XiMat	blood
11	chr6:27144000-27146600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:27144000-27146600	Active TSS	Left Ventricle	heart
13	chr6:27144000-27146600	Active TSS	Psoas Muscle	Psoas
14	chr6:27144000-27146800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:27144000-27146800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:27144000-27146800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:27144000-27146800	Active TSS	Ovary	ovary
18	chr6:27144000-27147000	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr6:27144000-27147000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:27144000-27147000	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr6:27144000-27147000	Active TSS	NH-A	brain
22	chr6:27144000-27147200	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr6:27144000-27147400	Active TSS	H1 Cell Line	embryonic stem cell
24	chr6:27144000-27147600	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr6:27144000-27147800	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:27144200-27146200	Active TSS	Fetal Muscle Leg	muscle
27	chr6:27144200-27146600	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr6:27144200-27146800	Active TSS	Muscle Satellite Cultured Cells	--
29	chr6:27144200-27146800	Active TSS	NHDF-Ad	bronchial
30	chr6:27144200-27147000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:27144200-27147000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:27144200-27147000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:27144200-27147000	Active TSS	A549	lung
34	chr6:27144200-27147000	Active TSS	HSMMtube	muscle
35	chr6:27144200-27147000	Active TSS	Osteobl	bone
36	chr6:27144200-27147200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:27144200-27147200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:27144200-27147400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:27144200-27147600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:27144200-27147600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:27144400-27146200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:27144400-27146400	Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr6:27144400-27146400	Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr6:27144400-27146400	Flanking Active TSS	Liver	Liver
45	chr6:27144400-27146400	Active TSS	Esophagus	oesophagus
46	chr6:27144400-27146600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:27144400-27146600	Active TSS	Primary T cells from cord blood	blood
48	chr6:27144400-27146600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr6:27144400-27146600	Active TSS	Brain Cingulate Gyrus	brain
50	chr6:27144400-27146600	Active TSS	HUVEC	blood vessel

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