Variant report
| Variant | rs9379980 |
|---|---|
| Chromosome Location | chr6:27306518-27306519 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27304153..27307072-chr6:27314456..27316020,2 | K562 | blood: | |
| 2 | chr6:27306245..27308352-chr6:27309133..27310933,3 | K562 | blood: | |
| 3 | chr6:27304529..27307497-chr6:27340384..27342346,2 | K562 | blood: | |
| 4 | chr6:27305160..27309365-chr6:27316148..27317927,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1011665 | 0.86[ASN][1000 genomes] |
| rs10946915 | 0.83[ASN][1000 genomes] |
| rs12529458 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12663650 | 0.84[ASN][1000 genomes] |
| rs12664996 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13220817 | 0.84[ASN][1000 genomes] |
| rs1883403 | 0.82[ASN][1000 genomes] |
| rs2235232 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2393926 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6913166 | 0.84[ASN][1000 genomes] |
| rs6914864 | 0.83[ASN][1000 genomes] |
| rs6922815 | 0.88[ASN][1000 genomes] |
| rs71559025 | 0.83[ASN][1000 genomes] |
| rs764284 | 0.88[ASN][1000 genomes] |
| rs7772739 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9357038 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9368503 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9393813 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017328 | chr6:27177147-27369588 | Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv883507 | chr6:27279982-27318836 | Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9379980 | ZNF391 | cis | lung | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:27301400-27321400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
