Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:29382118..29383047-chr6:29556881..29557810,6	MCF-7	breast:
2	chr6:29382100..29382616-chr6:29556898..29557418,2	MCF-7	breast:
3	chr2:189553470..189554187-chr6:29381441..29382421,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10807055	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946990	0.83[EUR][1000 genomes]
rs12193979	0.83[EUR][1000 genomes]
rs12202249	0.84[EUR][1000 genomes]
rs12207410	0.84[EUR][1000 genomes]
rs1362073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592404	0.83[EUR][1000 genomes]
rs1592407	0.87[AFR][1000 genomes]
rs2097771	0.87[AFR][1000 genomes]
rs2394609	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349863	0.84[EUR][1000 genomes]
rs7349876	0.84[EUR][1000 genomes]
rs7349908	0.83[EUR][1000 genomes]
rs7754054	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770592	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295805	0.83[EUR][1000 genomes]
rs9348829	0.83[EUR][1000 genomes]
rs9393957	0.84[EUR][1000 genomes]
rs9393958	0.84[EUR][1000 genomes]
rs9393960	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3350548	chr6:29364695-29385315	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3388437	chr6:29365115-29385315	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3517469	chr6:29365184-29385827	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3517470	chr6:29365184-29385827	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9380124	ZFP57	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29381600-29386600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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