Variant report

Variant	rs9380191
Chromosome Location	chr6:30769687-30769688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30732748..30734676-chr6:30767851..30770809,2	K562	blood:
2	chr6:30710469..30712305-chr6:30768724..30773816,7	MCF-7	breast:
3	chr6:30765847..30772235-chr6:30775518..30781372,10	K562	blood:
4	chr6:30766009..30775294-chr6:30775700..30782710,15	MCF-7	breast:
5	chr6:30710818..30713098-chr6:30768759..30771389,3	K562	blood:
6	chr6:30768767..30770954-chr6:30771391..30773686,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137331	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000228022	Chromatin interaction
ENSG00000137312	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10947101	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947102	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12525494	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528843	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12661685	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13191291	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13191728	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13198118	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201384	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13213083	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213098	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213469	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269854	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2394403	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3888583	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4248149	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4483030	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4587207	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711234	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4711237	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4713380	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713382	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713383	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713384	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713385	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713389	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4947289	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4947290	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901761	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901776	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6905957	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7751827	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751869	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295917	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295918	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295920	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9295924	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9368640	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368644	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9378108	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9378109	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9378148	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380189	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380193	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380195	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380198	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9391692	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9391694	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394014	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404973	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9404974	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9404975	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
5	esv2758041	chr6:30644693-30816319	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
6	esv2759413	chr6:30644693-30816319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
7	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
8	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
9	nsv527226	chr6:30716719-30772378	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv1023695	chr6:30754540-30773349	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30751000-30769800	Weak transcription	Right Ventricle	heart
2	chr6:30761600-30781000	Weak transcription	Small Intestine	intestine
3	chr6:30761800-30772000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:30763600-30771000	Enhancers	HepG2	liver
5	chr6:30763600-30772000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:30764000-30772000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:30767000-30770000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:30767200-30772000	Weak transcription	Spleen	Spleen
9	chr6:30767200-30781200	Weak transcription	Gastric	stomach
10	chr6:30767400-30772000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:30767400-30772000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:30767400-30772200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:30767800-30770200	Enhancers	HUVEC	blood vessel
14	chr6:30768400-30771000	Enhancers	Hela-S3	cervix
15	chr6:30768800-30770000	Enhancers	Fetal Muscle Trunk	muscle
16	chr6:30769000-30772000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:30769200-30771000	Enhancers	K562	blood
18	chr6:30769400-30769800	Enhancers	Fetal Kidney	kidney
19	chr6:30769400-30770000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:30769400-30770400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:30769400-30771200	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links