Variant report

Variant	rs9380583
Chromosome Location	chr6:36616641-36616642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36597486..36599707-chr6:36615187..36618681,3	MCF-7	breast:
2	chr6:36605328..36606866-chr6:36616080..36618764,2	K562	blood:
3	chr6:36615853..36625488-chr6:36645022..36649146,15	MCF-7	breast:
4	chr6:36615767..36617773-chr6:36645679..36648861,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4713994	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9368950	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9380584	0.86[ASN][1000 genomes]
rs9470367	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36609600-36617000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:36611600-36617000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:36611600-36617600	Weak transcription	Lung	lung
4	chr6:36611600-36628600	Weak transcription	Right Atrium	heart
5	chr6:36611800-36616800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:36611800-36617000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:36611800-36617400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:36612000-36617400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:36612000-36617400	Weak transcription	Colonic Mucosa	Colon
10	chr6:36612000-36617400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:36612000-36617400	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:36612000-36617400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:36612000-36617400	Weak transcription	Spleen	Spleen
14	chr6:36612600-36617400	Weak transcription	Fetal Intestine Large	intestine
15	chr6:36612800-36617200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:36613000-36616800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:36613000-36617400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:36613000-36617400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:36613000-36617400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:36613000-36617400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:36613000-36617600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:36613200-36616800	Weak transcription	Adipose Nuclei	Adipose
23	chr6:36613200-36617000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:36613200-36617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:36613200-36617000	Weak transcription	GM12878-XiMat	blood
26	chr6:36613200-36617000	Weak transcription	HSMM	muscle
27	chr6:36613200-36617000	Weak transcription	HSMMtube	muscle
28	chr6:36613200-36617200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:36613200-36617400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:36613200-36617400	Weak transcription	HMEC	breast
31	chr6:36613200-36617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:36613200-36618600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:36613200-36619600	Weak transcription	Placenta	Placenta
34	chr6:36613400-36617000	Weak transcription	Osteobl	bone
35	chr6:36613400-36617600	Weak transcription	Hela-S3	cervix
36	chr6:36613400-36625000	Weak transcription	Fetal Kidney	kidney
37	chr6:36613600-36617200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:36613600-36618000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:36613800-36617200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:36615600-36617400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:36615800-36617800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:36616000-36617000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:36616000-36617400	Weak transcription	Fetal Intestine Small	intestine
44	chr6:36616400-36616800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:36616600-36617200	Enhancers	HUVEC	blood vessel
46	chr6:36616600-36617400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:36616600-36618200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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