Variant report

Variant	rs9380601
Chromosome Location	chr6:36753618-36753619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16889039	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36746000-36756600	Weak transcription	Fetal Brain Male	brain
2	chr6:36746600-36754000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:36746600-36754000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:36746600-36756400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:36747000-36755800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:36747200-36756200	Weak transcription	Brain Anterior Caudate	brain
7	chr6:36748600-36756200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:36748600-36756400	Weak transcription	Fetal Kidney	kidney
9	chr6:36749600-36756800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:36749800-36756200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:36752600-36768400	Weak transcription	Right Atrium	heart
12	chr6:36752800-36754800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:36753000-36754600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:36753000-36756200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:36753200-36754400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:36753400-36754400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:36753600-36753800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:36753600-36754000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:36753600-36754000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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