Variant report

Variant	rs9380769
Chromosome Location	chr6:12092352-12092353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12662314	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12663812	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12664849	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16872348	0.83[AMR][1000 genomes]
rs2157492	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2228211	1.00[CEU][hapmap]
rs2327512	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28769650	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3777756	0.82[AMR][1000 genomes]
rs3777757	0.93[AMR][1000 genomes]
rs3777764	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3777767	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3777772	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3777774	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3777777	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3800499	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4317394	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4443504	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4484521	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4714187	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55637995	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6910367	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6917623	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6931770	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72828103	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72828104	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72828110	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7449638	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7741589	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12061600-12105200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:12061600-12109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:12065200-12095000	Weak transcription	NHDF-Ad	bronchial
4	chr6:12066400-12093000	Weak transcription	Fetal Thymus	thymus
5	chr6:12066400-12103600	Weak transcription	Pancreas	Pancrea
6	chr6:12066400-12107600	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:12066800-12109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:12069600-12095200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:12071600-12093000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:12071800-12094400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:12071800-12095400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:12071800-12098000	Weak transcription	NH-A	brain
14	chr6:12071800-12120400	Weak transcription	HepG2	liver
15	chr6:12072000-12093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:12072200-12092400	Weak transcription	Thymus	Thymus
17	chr6:12075800-12093400	Weak transcription	Colonic Mucosa	Colon
18	chr6:12077800-12098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:12077800-12113400	Weak transcription	HMEC	breast
20	chr6:12078000-12109800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:12078600-12093000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:12079200-12103600	Weak transcription	Fetal Intestine Large	intestine
23	chr6:12079400-12104600	Weak transcription	Fetal Intestine Small	intestine
24	chr6:12081800-12109800	Weak transcription	Aorta	Aorta
25	chr6:12082200-12111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:12082200-12111400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:12082200-12112800	Weak transcription	Spleen	Spleen
28	chr6:12084200-12093200	Weak transcription	Brain Substantia Nigra	brain
29	chr6:12084400-12092600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:12084400-12092600	Weak transcription	HSMM	muscle
31	chr6:12084400-12097800	Weak transcription	NHLF	lung
32	chr6:12084600-12093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:12084600-12095200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:12084600-12109600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:12084800-12095400	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:12084800-12098000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:12084800-12116600	Weak transcription	HSMMtube	muscle
38	chr6:12085200-12092800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:12085200-12095000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:12085600-12092400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:12085600-12092600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:12085600-12094000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:12085800-12092800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:12085800-12094400	Weak transcription	Adipose Nuclei	Adipose
45	chr6:12085800-12095400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:12085800-12097600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:12085800-12104000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:12086000-12107600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:12086000-12109600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:12086000-12113200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links