Variant report

Variant	rs938229
Chromosome Location	chr3:133088362-133088363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1109858	0.82[JPT][hapmap]
rs1114630	0.86[TSI][hapmap]
rs1197287	0.81[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1197289	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1197293	0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1197298	0.81[CHD][hapmap]
rs1201673	0.80[ASN][1000 genomes]
rs1708385	0.82[CHB][hapmap]
rs1795101	0.82[JPT][hapmap]
rs6802663	0.80[ASN][1000 genomes]
rs869751	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs938230	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs938231	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133080800-133098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:133081800-133090000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:133083200-133099200	Weak transcription	Lung	lung
4	chr3:133085800-133091600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:133086200-133088400	Enhancers	Brain Substantia Nigra	brain
6	chr3:133086200-133088600	Enhancers	Fetal Lung	lung
7	chr3:133086200-133090200	Enhancers	Fetal Brain Female	brain
8	chr3:133086200-133090800	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:133086400-133090400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:133086600-133088400	Enhancers	Brain Angular Gyrus	brain
11	chr3:133086800-133089800	Enhancers	Brain Germinal Matrix	brain
12	chr3:133087600-133088600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:133088000-133089200	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:133088000-133091000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:133088000-133093800	Weak transcription	HSMMtube	muscle
16	chr3:133088200-133089000	Weak transcription	Brain Anterior Caudate	brain
17	chr3:133088200-133089200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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