Variant report

Variant	rs9382303
Chromosome Location	chr6:13627151-13627152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13573127..13576343-chr6:13624827..13627639,3	MCF-7	breast:
2	chr6:13622285..13628716-chr6:13632838..13638490,8	K562	blood:
3	chr6:13619174..13622491-chr6:13623687..13628179,5	MCF-7	breast:
4	chr6:13571919..13573571-chr6:13626194..13627937,2	K562	blood:
5	chr6:13626339..13628335-chr6:13647622..13649299,2	K562	blood:
6	chr6:13624828..13628073-chr6:13628586..13632112,4	K562	blood:

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction
ENSG00000268059	Chromatin interaction
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11751539	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2071835	0.84[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes]
rs2841516	0.84[ASN][1000 genomes]
rs3180196	1.00[MKK][hapmap]
rs7742342	0.85[CHB][hapmap];0.91[CHD][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs7742903	0.81[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1016744	chr6:13622143-13664028	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019422	chr6:13622143-13694781	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13616600-13637400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:13617000-13628200	Strong transcription	Fetal Muscle Leg	muscle
3	chr6:13617000-13633000	Strong transcription	Fetal Muscle Trunk	muscle
4	chr6:13617200-13627200	Strong transcription	NH-A	brain
5	chr6:13617200-13627600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:13617200-13632800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr6:13617200-13632800	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr6:13617200-13633800	Weak transcription	Stomach Mucosa	stomach
9	chr6:13617200-13634600	Strong transcription	Placenta	Placenta
10	chr6:13617200-13634800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:13617200-13634800	Strong transcription	Fetal Intestine Large	intestine
12	chr6:13617200-13638800	Weak transcription	Aorta	Aorta
13	chr6:13617400-13627600	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr6:13617400-13627600	Strong transcription	HSMMtube	muscle
15	chr6:13617400-13630400	Strong transcription	Primary B cells from cord blood	blood
16	chr6:13617400-13636400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:13617600-13627400	Strong transcription	Left Ventricle	heart
18	chr6:13617600-13627600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:13617600-13627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:13617600-13632000	Strong transcription	Adipose Nuclei	Adipose
21	chr6:13617600-13632800	Strong transcription	Primary hematopoietic stem cells	blood
22	chr6:13617600-13633000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:13617600-13634600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:13617600-13634800	Strong transcription	Primary T cells from cord blood	blood
25	chr6:13617600-13635400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:13617600-13642200	Strong transcription	Fetal Thymus	thymus
27	chr6:13617600-13642200	Strong transcription	HSMM	muscle
28	chr6:13617600-13642400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:13617800-13627200	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr6:13617800-13627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:13617800-13628600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:13617800-13628600	Strong transcription	HMEC	breast
33	chr6:13617800-13629600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:13617800-13630000	Strong transcription	NHDF-Ad	bronchial
35	chr6:13617800-13632400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:13617800-13632600	Strong transcription	Liver	Liver
37	chr6:13617800-13633000	Strong transcription	Duodenum Mucosa	Duodenum
38	chr6:13617800-13633200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr6:13617800-13634800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:13617800-13638400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:13618000-13627400	Strong transcription	Hela-S3	cervix
42	chr6:13618000-13627600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:13618000-13627600	Strong transcription	Colon Smooth Muscle	Colon
44	chr6:13618000-13630000	Strong transcription	GM12878-XiMat	blood
45	chr6:13618000-13632200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:13618000-13633000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr6:13618000-13633200	Strong transcription	Osteobl	bone
48	chr6:13618000-13634800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:13618000-13634800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:13618000-13635400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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