Variant report

Variant	rs9382501
Chromosome Location	chr6:13760953-13760954
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13754402..13756101-chr6:13758431..13761297,2	K562	blood:
2	chr6:13759597..13761313-chr6:13762057..13763667,2	K562	blood:
3	chr6:13754250..13757011-chr6:13760480..13762806,2	K562	blood:
4	chr6:13759487..13762830-chr6:13781889..13785114,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12194076	0.84[ASN][1000 genomes]
rs12209561	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9382501	CCDC90A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13757000-13764200	Weak transcription	Pancreas	Pancrea
2	chr6:13759400-13761000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:13759800-13764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:13760200-13761000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:13760200-13761000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:13760400-13761000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:13760400-13761000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:13760400-13761000	Enhancers	Stomach Smooth Muscle	stomach
9	chr6:13760400-13761200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:13760400-13761400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:13760400-13761400	Enhancers	NHEK	skin
12	chr6:13760400-13761800	Enhancers	Aorta	Aorta
13	chr6:13760400-13762000	Enhancers	Right Atrium	heart
14	chr6:13760400-13762200	Enhancers	Colon Smooth Muscle	Colon
15	chr6:13760400-13764600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:13760600-13761000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:13760600-13761000	Enhancers	Osteobl	bone
18	chr6:13760600-13761400	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:13760600-13761600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:13760600-13762000	Enhancers	Fetal Brain Female	brain
21	chr6:13760600-13762200	Enhancers	Adipose Nuclei	Adipose
22	chr6:13760600-13763000	Enhancers	HMEC	breast
23	chr6:13760600-13763600	Enhancers	Fetal Brain Male	brain
24	chr6:13760800-13761000	Enhancers	NHDF-Ad	bronchial
25	chr6:13760800-13761400	Weak transcription	Ovary	ovary
26	chr6:13760800-13761400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:13760800-13761600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:13760800-13761800	Weak transcription	Esophagus	oesophagus
29	chr6:13760800-13762000	Enhancers	Right Ventricle	heart
30	chr6:13760800-13762400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:13760800-13763800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:13760800-13764200	Weak transcription	Lung	lung

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