Variant report

Variant	rs9382522
Chromosome Location	chr6:55531153-55531154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10807498	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216635	0.85[EUR][1000 genomes]
rs13220569	0.85[EUR][1000 genomes]
rs3891362	0.81[EUR][1000 genomes]
rs4364483	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4509122	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9382519	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9475371	0.81[EUR][1000 genomes]
rs9475372	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3381691	chr6:55506042-55532508	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9382522	ELOVL5	cis	parietal	SCAN
rs9382522	GFRAL	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55528800-55534200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:55529600-55531200	Enhancers	NHDF-Ad	bronchial
3	chr6:55529600-55531800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:55530000-55533400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:55530000-55533400	Weak transcription	Osteobl	bone
6	chr6:55530200-55533400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:55530400-55533400	Weak transcription	HMEC	breast
8	chr6:55530600-55534600	Enhancers	Fetal Lung	lung
9	chr6:55530800-55533000	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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