Variant report

Variant	rs9382932
Chromosome Location	chr6:14036790-14036791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14035982..14037504-chr6:14039133..14040792,2	K562	blood:
2	chr6:14035863..14038755-chr6:14048643..14050561,2	K562	blood:
3	chr6:13987468..13990820-chr6:14036587..14040374,4	K562	blood:
4	chr6:13925265..13927757-chr6:14036424..14038791,2	K562	blood:

Variant related genes	Relation type
ENSG00000180537	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9382933	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9382934	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.98[ASN][1000 genomes]
rs9396466	0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9382932	RNF182	cis	parietal	SCAN
rs9382932	DCUN1D5	trans	parietal	SCAN
rs9382932	TMEM14B	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14027800-14037400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:14034200-14036800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:14034800-14038400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:14035000-14037400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:14035000-14037600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:14035000-14037800	Enhancers	NHDF-Ad	bronchial
7	chr6:14035000-14037800	Enhancers	NHLF	lung
8	chr6:14035200-14036800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:14035200-14037000	Enhancers	HSMMtube	muscle
10	chr6:14035200-14037200	Enhancers	NH-A	brain
11	chr6:14035200-14037800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:14035200-14037800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:14035200-14038000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:14035400-14037800	Enhancers	Osteobl	bone
15	chr6:14035600-14037400	Weak transcription	Adipose Nuclei	Adipose
16	chr6:14035600-14038000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:14036200-14036800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:14036200-14037400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:14036200-14037800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:14036200-14037800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:14036200-14037800	Weak transcription	Placenta	Placenta
22	chr6:14036400-14037200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:14036400-14037400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:14036400-14037400	Weak transcription	NHEK	skin
25	chr6:14036400-14037600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:14036400-14037600	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:14036400-14037600	Weak transcription	HSMM	muscle
28	chr6:14036400-14037800	Weak transcription	Hela-S3	cervix
29	chr6:14036400-14037800	Weak transcription	HMEC	breast
30	chr6:14036600-14037400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:14036600-14037600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:14036600-14037800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr6:14036600-14037800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:14036600-14037800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:14036600-14037800	Enhancers	GM12878-XiMat	blood

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