Variant report

Variant	rs9383862
Chromosome Location	chr6:150168356-150168357
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150166972..150170448-chr6:150175876..150178840,3	K562	blood:
2	chr6:150147289..150147851-chr6:150168101..150168897,2	K562	blood:
3	chr6:150166079..150172408-chr6:150181587..150186360,13	MCF-7	breast:
4	chr6:150164239..150168667-chr6:150168889..150173398,4	K562	blood:
5	chr6:150166110..150169897-chr6:150177295..150181208,4	MCF-7	breast:
6	chr6:150167839..150171816-chr6:150186693..150189063,3	K562	blood:
7	chr6:150160714..150164051-chr6:150166023..150170073,4	MCF-7	breast:
8	chr6:150166050..150170337-chr6:150173456..150176763,5	MCF-7	breast:
9	chr6:150164423..150166949-chr6:150167300..150169014,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000268592	Chromatin interaction
ENSG00000273132	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10872647	0.82[CHB][hapmap]
rs1537590	0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs4870054	0.91[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9371201	0.86[CHB][hapmap]
rs9371502	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv1793743	chr6:150167398-150170444	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:150152800-150172600	Weak transcription	Aorta	Aorta
4	chr6:150155800-150182600	Weak transcription	Dnd41	blood
5	chr6:150156400-150168400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:150158800-150176400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:150159200-150172800	Weak transcription	Spleen	Spleen
8	chr6:150162200-150168400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:150162200-150175800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:150162600-150172000	Weak transcription	Liver	Liver
11	chr6:150162600-150177200	Weak transcription	Fetal Lung	lung
12	chr6:150163400-150169200	Enhancers	Placenta	Placenta
13	chr6:150163600-150175800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:150164200-150171800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:150164400-150168400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:150164400-150169000	Weak transcription	Ovary	ovary
17	chr6:150164400-150181800	Weak transcription	Brain Germinal Matrix	brain
18	chr6:150164600-150169600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:150164800-150169400	Enhancers	HMEC	breast
20	chr6:150165000-150181800	Weak transcription	Fetal Brain Female	brain
21	chr6:150165400-150168600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:150165400-150168800	Enhancers	Stomach Smooth Muscle	stomach
23	chr6:150166000-150169200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:150166000-150169400	Enhancers	Brain Angular Gyrus	brain
25	chr6:150166200-150169200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:150166200-150169400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:150166400-150168800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:150166400-150169600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:150166600-150168800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:150167000-150168600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:150167000-150168600	Enhancers	Esophagus	oesophagus
32	chr6:150167000-150168600	Enhancers	Fetal Muscle Trunk	muscle
33	chr6:150167000-150168600	Enhancers	Left Ventricle	heart
34	chr6:150167000-150169000	Enhancers	Fetal Muscle Leg	muscle
35	chr6:150167000-150169200	Enhancers	Brain Anterior Caudate	brain
36	chr6:150167000-150169200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr6:150167000-150169200	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr6:150167000-150169200	Enhancers	Fetal Heart	heart
39	chr6:150167000-150169400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:150167000-150169400	Enhancers	HSMMtube	muscle
41	chr6:150167000-150169400	Enhancers	NHDF-Ad	bronchial
42	chr6:150167000-150170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:150167200-150168600	Enhancers	Pancreas	Pancrea
44	chr6:150167200-150168600	Enhancers	Right Ventricle	heart
45	chr6:150167200-150168800	Enhancers	Rectal Smooth Muscle	rectum
46	chr6:150167200-150169000	Enhancers	Gastric	stomach
47	chr6:150167200-150169000	Enhancers	Lung	lung
48	chr6:150167200-150169200	Enhancers	Adipose Nuclei	Adipose
49	chr6:150167200-150169200	Enhancers	Brain Cingulate Gyrus	brain
50	chr6:150167200-150169200	Enhancers	Brain Hippocampus Middle	brain

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