Variant report

Variant	rs9384878
Chromosome Location	chr6:113975118-113975119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr6:113974223-113975370	GM12878	blood:	n/a	n/a
2	MTA3	chr6:113974418-113975245	GM12878	blood:	n/a	n/a
3	STAT3	chr6:113974680-113975245	GM12878	blood:	n/a	chr6:113975211-113975222
4	NFIC	chr6:113974303-113975402	GM12878	blood:	n/a	n/a
5	KAP1	chr6:113974759-113975125	HEK293	kidney:	n/a	n/a
6	POLR2A	chr6:113974954-113976316	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr6:113975087-113975411	HepG2	liver:	n/a	chr6:113975268-113975280
8	STAT3	chr6:113975096-113975292	MCF10A-Er-Src	breast:	n/a	chr6:113975211-113975222
9	RUNX3	chr6:113974405-113975220	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:113973300..113975727-chr6:114178207..114180740,3	MCF-7	breast:
2	chr6:113973673..113976294-chr6:114178537..114180180,2	MCF-7	breast:
3	chr6:113966781..113968914-chr6:113973487..113975811,2	MCF-7	breast:
4	chr20:46442704..46445148-chr6:113974663..113976221,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230943	TF binding region
ENSG00000155130	Chromatin interaction

SNP	Gene	Cis/trans	Tissue	Source
rs9384878	COL10A1	cis	parietal	SCAN
rs9384878	MARCKS	cis	multi-tissue	Pritchard
rs9384878	MARCKS	cis	Liver	GTEx

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113967400-113975600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:113967600-113980600	Weak transcription	Placenta	Placenta
3	chr6:113970800-113975600	Weak transcription	Small Intestine	intestine
4	chr6:113970800-113975800	Weak transcription	Aorta	Aorta
5	chr6:113970800-113977400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:113971000-113975600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:113971200-113975400	Weak transcription	Osteobl	bone
8	chr6:113971200-113976000	Weak transcription	Adipose Nuclei	Adipose
9	chr6:113971400-113981000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:113971600-113975200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:113971600-113979000	Weak transcription	HepG2	liver
12	chr6:113972600-113975600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:113972600-113975600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:113972600-113975600	Weak transcription	Gastric	stomach
15	chr6:113972600-113976000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:113972800-113975200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:113972800-113975200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:113972800-113975600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:113972800-113975600	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:113972800-113975600	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:113972800-113975600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:113974600-113975200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:113974600-113975600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:113974800-113975200	Flanking Active TSS	GM12878-XiMat	blood
25	chr6:113974800-113975400	Enhancers	A549	lung
26	chr6:113974800-113976200	Enhancers	Liver	Liver
27	chr6:113974800-113976200	Enhancers	HMEC	breast
28	chr6:113974800-113977600	Enhancers	NHEK	skin
29	chr6:113975000-113975200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:113975000-113975200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:113975000-113975400	Weak transcription	Stomach Mucosa	stomach
32	chr6:113975000-113975800	Enhancers	Rectal Smooth Muscle	rectum
33	chr6:113975000-113976200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:113975000-113976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:113975000-113976600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:113975000-113982000	Weak transcription	Monocytes-CD14+_RO01746	blood

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