Variant report

Variant	rs9385571
Chromosome Location	chr6:131489690-131489691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131482888..131484884-chr6:131488327..131490881,2	MCF-7	breast:
2	chr6:131206207..131207173-chr6:131488628..131489910,7	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1408027	1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs1408028	0.99[ASN][1000 genomes]
rs1852783	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1881573	0.82[JPT][hapmap]
rs1886073	0.80[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4483002	1.00[ASN][1000 genomes]
rs6569735	0.89[ASN][1000 genomes]
rs6569736	0.99[ASN][1000 genomes]
rs7772245	0.81[JPT][hapmap]
rs9375805	0.86[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.98[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131457200-131493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:131457200-131504400	Weak transcription	Spleen	Spleen
3	chr6:131457600-131505600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:131457600-131520800	Weak transcription	Right Ventricle	heart
5	chr6:131457800-131504200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:131457800-131504200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:131458000-131498800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:131458000-131505600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:131458000-131505800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:131458200-131505200	Weak transcription	Fetal Lung	lung
11	chr6:131458200-131513400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:131458400-131498000	Weak transcription	Aorta	Aorta
13	chr6:131458400-131504200	Weak transcription	Dnd41	blood
14	chr6:131461200-131494600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:131464000-131499200	Weak transcription	Fetal Stomach	stomach
16	chr6:131464800-131499200	Weak transcription	Esophagus	oesophagus
17	chr6:131468200-131499800	Weak transcription	Lung	lung
18	chr6:131469200-131504200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:131481200-131494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:131481200-131504400	Weak transcription	HSMM	muscle
21	chr6:131483000-131489800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:131483000-131506200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:131483600-131504200	Weak transcription	Pancreas	Pancrea
24	chr6:131484000-131504200	Weak transcription	Primary T cells from cord blood	blood
25	chr6:131484200-131504400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:131484400-131509200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:131485000-131504200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:131485200-131492200	Weak transcription	HUVEC	blood vessel
29	chr6:131485200-131504200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:131485400-131504400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:131485400-131509600	Weak transcription	Small Intestine	intestine
32	chr6:131485600-131494600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:131485600-131504200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:131485600-131514000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:131485800-131490200	Weak transcription	Ovary	ovary
36	chr6:131485800-131504200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:131486000-131491400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:131486000-131494400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:131486000-131498400	Weak transcription	Fetal Intestine Large	intestine
40	chr6:131486000-131504200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:131486000-131505000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:131486000-131505600	Weak transcription	HepG2	liver
43	chr6:131486200-131492600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:131486200-131492600	Weak transcription	Osteobl	bone
45	chr6:131486200-131494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:131486200-131494600	Weak transcription	Brain Anterior Caudate	brain
47	chr6:131486200-131494600	Weak transcription	Brain Substantia Nigra	brain
48	chr6:131486200-131499000	Weak transcription	Brain Angular Gyrus	brain
49	chr6:131486200-131504200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:131486200-131504200	Weak transcription	Brain Inferior Temporal Lobe	brain

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