Variant report

Variant	rs9385594
Chromosome Location	chr6:132381115-132381116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3966747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132378600-132381800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:132379200-132381800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:132379200-132385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:132379400-132383400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:132379400-132385600	Enhancers	NHDF-Ad	bronchial
9	chr6:132379600-132386200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:132379800-132383600	Enhancers	Brain Germinal Matrix	brain
11	chr6:132379800-132384400	Weak transcription	Fetal Heart	heart
12	chr6:132380200-132382000	Enhancers	NHLF	lung
13	chr6:132380200-132383800	Enhancers	HUVEC	blood vessel
14	chr6:132380400-132382000	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:132380400-132382600	Weak transcription	Ovary	ovary
16	chr6:132380600-132381800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:132380800-132381200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:132380800-132381200	Weak transcription	Osteobl	bone
19	chr6:132380800-132384400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:132381000-132384000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links