Variant report

Variant	rs9385610
Chromosome Location	chr6:132765112-132765113
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132757307..132760586-chr6:132764048..132767384,4	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9375890	0.84[AFR][1000 genomes]
rs9399029	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132760000-132767200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132761400-132766400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132762600-132778000	Weak transcription	Aorta	Aorta
4	chr6:132762600-132778000	Weak transcription	Gastric	stomach
5	chr6:132763800-132766600	Weak transcription	A549	lung
6	chr6:132764000-132767000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:132764000-132774600	Weak transcription	Fetal Lung	lung
8	chr6:132764200-132771000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:132764200-132774800	Weak transcription	Placenta	Placenta
10	chr6:132764400-132765600	Enhancers	HSMMtube	muscle
11	chr6:132764400-132766200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:132764400-132768200	Enhancers	Osteobl	bone
13	chr6:132764400-132780200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:132764600-132765400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:132764600-132768400	Enhancers	NHDF-Ad	bronchial
16	chr6:132764600-132769000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:132764600-132776600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:132764600-132779400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:132764800-132765600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:132764800-132765600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:132764800-132765600	Enhancers	HSMM	muscle
22	chr6:132764800-132765800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:132764800-132766200	Enhancers	HMEC	breast
24	chr6:132764800-132766600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:132764800-132768200	Enhancers	NH-A	brain
26	chr6:132764800-132768200	Enhancers	NHLF	lung
27	chr6:132764800-132774600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:132764800-132777800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:132765000-132767000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:132765000-132767200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:132765000-132777000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links