Variant report
Variant | rs9385985 |
---|---|
Chromosome Location | chr6:142364871-142364872 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:34)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:34 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:18807037..18808557-chr6:142364804..142366320,2 | MCF-7 | breast: | |
2 | chr2:18028840..18030359-chr6:142364797..142366321,2 | K562 | blood: | |
3 | chr3:73158440..73162071-chr6:142364794..142367821,11 | K562 | blood: | |
4 | chr20:51476079..51477599-chr6:142364799..142367796,2 | MCF-7 | breast: | |
5 | chr17:41462135..41468687-chr6:142364795..142367816,19 | K562 | blood: | |
6 | chr5:137649363..137650864-chr6:142364815..142366317,2 | K562 | blood: | |
7 | chr17:41398699..41402637-chr6:142364804..142367821,8 | MCF-7 | breast: | |
8 | chr3:73160094..73162090-chr6:142364795..142366316,3 | MCF-7 | breast: | |
9 | chr17:41398766..41402548-chr6:142364795..142367825,22 | K562 | blood: | |
10 | chr2:169365139..169366658-chr6:142364815..142367814,2 | K562 | blood: | |
11 | chr17:41462273..41468250-chr6:142364795..142367825,23 | K562 | blood: | |
12 | chr17:41380090..41383896-chr6:142364797..142367825,21 | K562 | blood: | |
13 | chr17:41462176..41466216-chr6:142364797..142367825,8 | MCF-7 | breast: | |
14 | chr10:103124607..103126130-chr6:142364797..142366317,3 | K562 | blood: | |
15 | chr4:103260693..103262213-chr6:142364799..142366317,2 | K562 | blood: | |
16 | chr17:41398742..41402600-chr6:142364799..142367825,21 | K562 | blood: | |
17 | chr13:52409628..52411128-chr6:142364817..142366324,2 | MCF-7 | breast: | |
18 | chr17:41391510..41393303-chr6:142364805..142367822,3 | K562 | blood: | |
19 | chr10:103124607..103126128-chr6:142364797..142367796,2 | K562 | blood: | |
20 | chr10:111980949..111982469-chr6:142364799..142366321,4 | K562 | blood: | |
21 | chr19:49942464..49945484-chr6:142364799..142367795,4 | K562 | blood: | |
22 | chr3:115770645..115772165-chr6:142364804..142366315,2 | MCF-7 | breast: | |
23 | chr6:142364797..142367795-chrX:77930320..77931841,2 | K562 | blood: | |
24 | chr2:106399775..106401275-chr6:142364820..142367803,2 | MCF-7 | breast: | |
25 | chr19:49942462..49943984-chr6:142364795..142366315,3 | K562 | blood: | |
26 | chr12:77377724..77379224-chr6:142364821..142367801,2 | K562 | blood: | |
27 | chr11:62607617..62609155-chr6:142364815..142367815,4 | K562 | blood: | |
28 | chr11:62607631..62609197-chr6:142364799..142366321,4 | MCF-7 | breast: | |
29 | chr6:142310115..142310645-chr6:142364498..142365481,2 | MCF-7 | breast: | |
30 | chr11:62607617..62610628-chr6:142364795..142367820,5 | K562 | blood: | |
31 | chr3:73158440..73161632-chr6:142364819..142367821,7 | K562 | blood: | |
32 | chr17:41445015..41446827-chr6:142364795..142366297,2 | K562 | blood: | |
33 | chr3:73159944..73162090-chr6:142364797..142366302,3 | MCF-7 | breast: | |
34 | chr17:41380201..41383708-chr6:142364797..142367825,26 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000222414 | Chromatin interaction |
ENSG00000257199 | Chromatin interaction |
ENSG00000223247 | Chromatin interaction |
ENSG00000236383 | Chromatin interaction |
ENSG00000188825 | Chromatin interaction |
ENSG00000133316 | Chromatin interaction |
ENSG00000104888 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1931996 | 0.83[CEU][hapmap] |
rs1989181 | 0.81[CHB][hapmap];0.84[JPT][hapmap] |
rs225648 | 0.83[JPT][hapmap] |
rs225699 | 0.83[JPT][hapmap] |
rs3811083 | 0.81[CHB][hapmap];0.80[JPT][hapmap] |
rs3811088 | 0.85[CHB][hapmap];0.94[JPT][hapmap] |
rs4130453 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4294022 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4569984 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4628119 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4896567 | 0.89[EUR][1000 genomes] |
rs4896568 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4896576 | 0.86[CHB][hapmap];0.94[JPT][hapmap] |
rs4896580 | 1.00[CEU][hapmap] |
rs6570497 | 0.84[CEU][hapmap];0.81[CHB][hapmap] |
rs6902780 | 0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs6906577 | 0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6910529 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6926279 | 0.86[CHB][hapmap];0.83[JPT][hapmap] |
rs6934439 | 0.86[CHB][hapmap];0.94[JPT][hapmap] |
rs6940882 | 0.81[CHB][hapmap];0.80[JPT][hapmap] |
rs7742164 | 0.86[CHB][hapmap];0.94[JPT][hapmap] |
rs7756224 | 0.86[CHB][hapmap];0.94[JPT][hapmap] |
rs7771264 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7773151 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7773210 | 0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs9373333 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9389972 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9403367 | 0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs9484600 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv604792 | chr6:142192725-142399251 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv1019170 | chr6:142234933-142397088 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv886732 | chr6:142290338-142536049 | Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
4 | nsv886733 | chr6:142316672-142514226 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
5 | nsv464069 | chr6:142322456-142407741 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
6 | nsv604794 | chr6:142322456-142407741 | Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
7 | nsv1027489 | chr6:142336722-142429903 | Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
8 | nsv886734 | chr6:142347611-142523865 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
9 | nsv830824 | chr6:142361107-142544929 | Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:142360600-142366200 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
2 | chr6:142360600-142366200 | Weak transcription | Osteobl | bone |
3 | chr6:142360800-142366200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
4 | chr6:142360800-142366200 | Weak transcription | NHLF | lung |
5 | chr6:142361000-142366200 | Weak transcription | NHDF-Ad | bronchial |
6 | chr6:142362200-142376600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |