Variant report

Variant	rs9386872
Chromosome Location	chr6:110375361-110375362
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17543938	0.83[AMR][1000 genomes]
rs41381746	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56085802	0.83[AMR][1000 genomes]
rs57068634	0.83[AMR][1000 genomes]
rs73533828	0.81[EUR][1000 genomes]
rs73533831	0.81[EUR][1000 genomes]
rs73765666	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73765667	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73765668	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73765671	0.83[AMR][1000 genomes]
rs73765672	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110373000-110375400	Enhancers	Placenta	Placenta
2	chr6:110375000-110376600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:110375000-110380800	Weak transcription	Ovary	ovary
4	chr6:110375200-110376400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:110375200-110376400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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