Variant report
| Variant | rs9387479 |
|---|---|
| Chromosome Location | chr6:117792612-117792613 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:117789944..117793123-chr6:117802040..117805082,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164465 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10782186 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12527127 | 0.84[ASN][1000 genomes] |
| rs12528785 | 0.88[ASN][1000 genomes] |
| rs2057314 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2105907 | 0.87[ASN][1000 genomes] |
| rs2180811 | 0.82[AMR][1000 genomes] |
| rs2354346 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2883418 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34431655 | 0.90[ASN][1000 genomes] |
| rs34882116 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4945586 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4946256 | 0.82[AMR][1000 genomes] |
| rs4946258 | 0.88[ASN][1000 genomes] |
| rs4946259 | 0.83[EUR][1000 genomes] |
| rs4946260 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6911915 | 0.87[ASN][1000 genomes] |
| rs6937083 | 0.82[AMR][1000 genomes] |
| rs6940922 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs929057 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs929058 | 0.84[ASN][1000 genomes] |
| rs9320604 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9374662 | 0.80[AMR][1000 genomes] |
| rs9387478 | 0.82[AMR][1000 genomes] |
| rs9387481 | 0.83[ASN][1000 genomes] |
| rs9481728 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9489213 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9688361 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532050 | chr6:117528154-118203005 | ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9387479 | DCBLD1 | cis | Thyroid | GTEx |
| rs9387479 | DCBLD1 | cis | Adipose Subcutaneous | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
