Variant report

Variant	rs9387540
Chromosome Location	chr6:118347874-118347875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12665511	0.91[EUR][1000 genomes]
rs28574916	0.91[EUR][1000 genomes]
rs60195444	0.96[EUR][1000 genomes]
rs62431178	0.96[EUR][1000 genomes]
rs62431179	0.96[EUR][1000 genomes]
rs62431180	0.96[EUR][1000 genomes]
rs62431213	0.91[EUR][1000 genomes]
rs62431214	0.91[EUR][1000 genomes]
rs62431217	0.91[EUR][1000 genomes]
rs62431218	0.83[EUR][1000 genomes]
rs62431230	0.91[EUR][1000 genomes]
rs62431232	0.91[EUR][1000 genomes]
rs7746741	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118338800-118352400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118343400-118354800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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